Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00590 ATGAGCAAAGGTTTTTGGATGACTAAGGGTCCTGGGCATGAAAATGATGCAAATTCAACTTTTGACAGCCCATCATTACTAGACGCTAAGCGGGCACATCACTGGTTTATAGATGGTTGTGAGACACAGGTTTTCCCCAACAAGAAACAAGCAATTCAAGCTTCGAATAGTAAAATGACCGGAGCGCTGTCAAATGTGAATGTTCTTCCTTGGGATCATCATGCTGCTAATTATCAGTCTGTTTCACATCAACTTATCGGTCGCCTACTTGGACCTGAATCAATAAGGTCCGCTGACTTCGATCTAACAAAAGCATCTTCTGTAATGTCTGATAATTTGGATCTCAGGAGAAAAGGTATTGAAGTTGAAGAACAATATGGAGAGGATGCATCTGTTGGGTTGTCTGTTTCTCATGGTTTGGAGGACCCTGAAACATGTCTTAGCTACGGAGGAATTAGAAAAGTTAAAGTCAATCAGATTAAAGATAATATACATGATTTGCAACCATGTCTAAGAAGTAATTCTAATAGGGAAGATGGTGGTCAACTTACCATAGAAGGCTACTATAAGGATATCGAAACGGGTCTTGTGTCTGTGGGATCAGCCTATATTAAGGAGGATGACAGTTTCAATTTGATGAATCAAACCTCCAACGATGGGGATCGCCACATTAGGTTTCTAGGTCATAATGGGAAGGTGGATGACAATGCTGTCTCCGTCGGTGATGATTATGGTAAGCGGGATTCCAATATAATCTCATTTGACGGATTTCCCGATGAGCAAGATATTATCTCCTTAGGCAGGTCTCTGGGTAGCCATGACTCAACATTCTATGAACCTTCATTCCAAGCAACTGAAGCTGATGGTGTCACAGAATTGGAATCATCTAGTTTTGATGTAGGTGTAAGCAGTACACAGATAGCTAAGCAAAAGCCTGATACGATGCCGAAGAGTAGACCAGAATACAAAATGAGGAAAGAAGCTCCAAACAGCTTTCCTTCAAATGTTAGAAGCTTGATATCAACTGGTATGCTCGATGGCGTTCCTGTTAAGTACGTTTCTGTAGCCAGAGAGGAGCTTCGTGGAATTATAAGGGGATCTGGCTATCTTTGTGGATGCCAATCTTGCAACTTTTCCAAGATGCTTAATGCCTACGAGTTTGAGCGTCACGCTGGCTGCAAAACAAAACACCCAAATAATCATATATACTTCGAGAATGGGAAGACGATTTACCAAATAGTACAAGAATTAAGAAGCACCCCAGAGAGCTTGTTGTTTGATACAATTCAAACAATATTTGGTGCACCTATCAATCAGAAATCTTTTCGGATTTGGAAAGAATCATTTCAAGCAGCTACTCGTGAGCTTCAGCGCATATATGGTAAGGATGAACTTAACCTTTAG 1404 40.88 MSKGFWMTKGPGHENDANSTFDSPSLLDAKRAHHWFIDGCETQVFPNKKQAIQASNSKMTGALSNVNVLPWDHHAANYQSVSHQLIGRLLGPESIRSADFDLTKASSVMSDNLDLRRKGIEVEEQYGEDASVGLSVSHGLEDPETCLSYGGIRKVKVNQIKDNIHDLQPCLRSNSNREDGGQLTIEGYYKDIETGLVSVGSAYIKEDDSFNLMNQTSNDGDRHIRFLGHNGKVDDNAVSVGDDYGKRDSNIISFDGFPDEQDIISLGRSLGSHDSTFYEPSFQATEADGVTELESSSFDVGVSSTQIAKQKPDTMPKSRPEYKMRKEAPNSFPSNVRSLISTGMLDGVPVKYVSVAREELRGIIRGSGYLCGCQSCNFSKMLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDTIQTIFGAPINQKSFRIWKESFQAATRELQRIYGKDELNL 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6625512 6628860 + Cp4.1LG16g05890.1 Cpe16g00590 482965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00590 467 Pfam Tify domain binding domain 362 417 IPR032308 -
Cpe16g00590 467 MobiDBLite consensus disorder prediction 301 320 - -
Cpe16g00590 467 PANTHER DNA-BINDING PROTEIN 2 467 - -
Cpe16g00590 467 MobiDBLite consensus disorder prediction 1 21 - -
Cpe16g00590 467 PANTHER AUTOIMMUNE REGULATOR 2 467 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00590 - - - bhj:120089449 872.848
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00590 Cpe-Chr16:6625512 Cpe03g00213 Cpe-Chr3:1062394 2.25E-06 dispersed
Cpe01g01104 Cpe-Chr1:6521592 Cpe16g00590 Cpe-Chr16:6625512 1.54E-42 wgd
Cpe01g00193 Cpe-Chr1:1091374 Cpe16g00590 Cpe-Chr16:6625512 2.96E-42 wgd
Cpe16g00590 Cpe-Chr16:6625512 Cpe03g00132 Cpe-Chr3:661351 3.38E-43 wgd
Cpe16g00590 Cpe-Chr16:6625512 Cpe05g00901 Cpe-Chr5:5948305 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe08g01153 CCT 18 847 PHD Transcription Factor Family AT3G53680 52.7 2.4e-247 852.4
Cpe03g00132 CCT 25 812 PHD Transcription Factor Family AT3G53680 51.6 2.1e-232 802.7
Cpe01g00193 CCT,ECH 483 609 PHD Transcription Factor Family AT3G53680 55.1 5.2e-37 153.7
Cpe16g00590 . 312 450 PHD Transcription Factor Family AT3G53680 51.8 5.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004604 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 4 3 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00590 Cpe_Chr16 FPKM 6.336698 8.465974 22.368731 23.762871 26.057699 20.098385 27.183064 5.720965 6.379376 5.864388