Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00590 ATGAGCAAAGGTTTTTGGATGACTAAGGGTCCTGGGCATGAAAATGATGCAAATTCAACTTTTGACAGCCCATCATTACTAGACGCTAAGCGGGCACATCACTGGTTTATAGATGGTTGTGAGACACAGGTTTTCCCCAACAAGAAACAAGCAATTCAAGCTTCGAATAGTAAAATGACCGGAGCGCTGTCAAATGTGAATGTTCTTCCTTGGGATCATCATGCTGCTAATTATCAGTCTGTTTCACATCAACTTATCGGTCGCCTACTTGGACCTGAATCAATAAGGTCCGCTGACTTCGATCTAACAAAAGCATCTTCTGTAATGTCTGATAATTTGGATCTCAGGAGAAAAGGTATTGAAGTTGAAGAACAATATGGAGAGGATGCATCTGTTGGGTTGTCTGTTTCTCATGGTTTGGAGGACCCTGAAACATGTCTTAGCTACGGAGGAATTAGAAAAGTTAAAGTCAATCAGATTAAAGATAATATACATGATTTGCAACCATGTCTAAGAAGTAATTCTAATAGGGAAGATGGTGGTCAACTTACCATAGAAGGCTACTATAAGGATATCGAAACGGGTCTTGTGTCTGTGGGATCAGCCTATATTAAGGAGGATGACAGTTTCAATTTGATGAATCAAACCTCCAACGATGGGGATCGCCACATTAGGTTTCTAGGTCATAATGGGAAGGTGGATGACAATGCTGTCTCCGTCGGTGATGATTATGGTAAGCGGGATTCCAATATAATCTCATTTGACGGATTTCCCGATGAGCAAGATATTATCTCCTTAGGCAGGTCTCTGGGTAGCCATGACTCAACATTCTATGAACCTTCATTCCAAGCAACTGAAGCTGATGGTGTCACAGAATTGGAATCATCTAGTTTTGATGTAGGTGTAAGCAGTACACAGATAGCTAAGCAAAAGCCTGATACGATGCCGAAGAGTAGACCAGAATACAAAATGAGGAAAGAAGCTCCAAACAGCTTTCCTTCAAATGTTAGAAGCTTGATATCAACTGGTATGCTCGATGGCGTTCCTGTTAAGTACGTTTCTGTAGCCAGAGAGGAGCTTCGTGGAATTATAAGGGGATCTGGCTATCTTTGTGGATGCCAATCTTGCAACTTTTCCAAGATGCTTAATGCCTACGAGTTTGAGCGTCACGCTGGCTGCAAAACAAAACACCCAAATAATCATATATACTTCGAGAATGGGAAGACGATTTACCAAATAGTACAAGAATTAAGAAGCACCCCAGAGAGCTTGTTGTTTGATACAATTCAAACAATATTTGGTGCACCTATCAATCAGAAATCTTTTCGGATTTGGAAAGAATCATTTCAAGCAGCTACTCGTGAGCTTCAGCGCATATATGGTAAGGATGAACTTAACCTTTAG 1404 40.88 MSKGFWMTKGPGHENDANSTFDSPSLLDAKRAHHWFIDGCETQVFPNKKQAIQASNSKMTGALSNVNVLPWDHHAANYQSVSHQLIGRLLGPESIRSADFDLTKASSVMSDNLDLRRKGIEVEEQYGEDASVGLSVSHGLEDPETCLSYGGIRKVKVNQIKDNIHDLQPCLRSNSNREDGGQLTIEGYYKDIETGLVSVGSAYIKEDDSFNLMNQTSNDGDRHIRFLGHNGKVDDNAVSVGDDYGKRDSNIISFDGFPDEQDIISLGRSLGSHDSTFYEPSFQATEADGVTELESSSFDVGVSSTQIAKQKPDTMPKSRPEYKMRKEAPNSFPSNVRSLISTGMLDGVPVKYVSVAREELRGIIRGSGYLCGCQSCNFSKMLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDTIQTIFGAPINQKSFRIWKESFQAATRELQRIYGKDELNL 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6625512 6628860 + Cp4.1LG16g05890.1 Cpe16g00590 482965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00590 467 Pfam Tify domain binding domain 362 417 IPR032308 -
Cpe16g00590 467 MobiDBLite consensus disorder prediction 301 320 - -
Cpe16g00590 467 PANTHER DNA-BINDING PROTEIN 2 467 - -
Cpe16g00590 467 MobiDBLite consensus disorder prediction 1 21 - -
Cpe16g00590 467 PANTHER AUTOIMMUNE REGULATOR 2 467 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00590 Cpe-Chr16:6625512 Cpe03g00213 Cpe-Chr3:1062394 2.25E-06 dispersed
Cpe01g01104 Cpe-Chr1:6521592 Cpe16g00590 Cpe-Chr16:6625512 1.54E-42 wgd
Cpe01g00193 Cpe-Chr1:1091374 Cpe16g00590 Cpe-Chr16:6625512 2.96E-42 wgd
Cpe16g00590 Cpe-Chr16:6625512 Cpe03g00132 Cpe-Chr3:661351 3.38E-43 wgd
Cpe16g00590 Cpe-Chr16:6625512 Cpe05g00901 Cpe-Chr5:5948305 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00590 - - bhj:120089449 872.848