Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00603 ATGGAGGAGGAGAACAATGGCGGCTTCTTTCGGAGTTTGATCGACTTGGTGAACGACGTAGCTTTGATCTCAGATTACAGGTACGCGGTCAGAAAGCAGTATTGTAATCTAGCTAGGCGACTGAAGCTGTTGATCCCAATGTTTGAGGAGATGAGGGATATGAAGCAGGCGCTGCCGGACAATACCGTGGGAGCTCTTGTTTCGTTGAAGAAAGCTATGGAATCTACCAAGGAGTTGCTTAGACTTGGGACGGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGCAACTTTTGAATCAATTTCAAGAGTTGTCAGCAAGACTAGAGCAAGCTTTGAATGAAATTTCACATGTAGATCTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTCCTCTCTCAATTCAAAAGAGCTAGAGGAAGGAATGATGCACAGGATGTCGAGCTGTATTCTAATCTCCACACTCTCTATAACAACAGCAAAGACTTAGCTACTGATCCTTCTATCTTGAAGGGACTGGCTGAAAAGTTGCAGTTGATGAACGTAGATGATCTTACTCAAGAGTCTCTTGCCTTGCATGAAATGGTTTCGGCCAGTGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATACTATTGAAGAAAATAAAAGATTTTATGCTAACTGAAAACCCTGAAATTGGCGCTTCTTCTAAAGAACAAAGTCATCCTCGCACTGGTAGACAAGCGACTGCTGGTAAGAAAGATATATCGTCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTGGATTTGATGAAAGATCCTGTTATTGTCTCCACCGGACAGACCTATGAACGTACTTTCATTGAGAAGTGGCTGGCAGATGGACACTCGACATGCCCAAAAACTCAACAAGTCCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGCAGTCTCATAGCTCAATGGTGCGAGGCCAATGGAATTGAACCACCACAACGTTCCAGCAGTTCTCAGCCCAGTGAATTTACAAATCCTGCTGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGCTAACATTGAAGACAAGCGATCTGCTGCGGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTAGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGACCTCCTTTCAACAACCGACCCCCTCACTCAAGAACATGCCGTGACAGCATTGCTTAACCTTTCAATTTGTGACAATAATAAGAGAAGTATCATGTCCTGTAGGGCAGCGCCTGGCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCTGTTGTAGATGAATATAAAGTAATGATTGGCGCATCAGGAGCCATTCCACCACTTATTGCACTGCTCAATGAAGGTACTCAGAGGGGGAAGAAGGACGCTGCAACCGCTCTTTTCAACTTATGTTTCTACCAAGGGAACAAAGTAAAGGCAGTCAGGGGTGGTGTTGTTTCCATATTGATGCAGCTGTTGACAGAATCTAGAATAGGGATGGTAGATGAGGCCCTGGCTATTCTAGCCATACTGGCCAGCAATTCCGAAGGTCGGGCTGCCATTGGCGCTGCCGAATCCGTCCCCACTTTAGTAGCTCTCATTGGAACAGGATCCCCTAGGAACAGAGAAAATGCAGCTGCAGTTTTGATGCATATTTGCACCGGAGACCAACGGCATATCGTGGAAGCAAAGGAGCTCGGAGTGATTAGTTTGCTTATAGATTTGGCTGAAAATGGCACAGATAGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAACAGGTTTACTGAGCAGCAGAAAGAGGCTGAGGTTCAGACCCGGCTGTTGCTACCACCACCGCCACCTCCCACAATCGGAAACGTCGAAAGCTAA 1977 45.78 MEEENNGGFFRSLIDLVNDVALISDYRYAVRKQYCNLARRLKLLIPMFEEMRDMKQALPDNTVGALVSLKKAMESTKELLRLGTEGSKIYLALEREQLLNQFQELSARLEQALNEISHVDLDISDEVKEQVELVLSQFKRARGRNDAQDVELYSNLHTLYNNSKDLATDPSILKGLAEKLQLMNVDDLTQESLALHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGASSKEQSHPRTGRQATAGKKDISSLHIPEDFRCPISLDLMKDPVIVSTGQTYERTFIEKWLADGHSTCPKTQQVLTSKILTPNYVLRSLIAQWCEANGIEPPQRSSSSQPSEFTNPAERSKYEALLHKLTSANIEDKRSAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPGIVHVLKWGSMEARENAAATLFSLSVVDEYKVMIGASGAIPPLIALLNEGTQRGKKDAATALFNLCFYQGNKVKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAESVPTLVALIGTGSPRNRENAAAVLMHICTGDQRHIVEAKELGVISLLIDLAENGTDRGKRKATQLLDQINRFTEQQKEAEVQTRLLLPPPPPPTIGNVES 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6674165 6678719 - Cp4.1LG16g06010.1 Cpe16g00603 482978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00603 658 Coils Coil 620 640 - -
Cpe16g00603 658 PANTHER U BOX DOMAIN-CONTAINING 11 643 - -
Cpe16g00603 658 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Cpe16g00603 658 Gene3D - 10 119 IPR036537 GO:0007166
Cpe16g00603 658 CDD RING-Ubox_PUB 263 305 IPR045210 -
Cpe16g00603 658 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 643 - -
Cpe16g00603 658 Pfam Armadillo/beta-catenin-like repeat 467 504 IPR000225 GO:0005515
Cpe16g00603 658 Pfam Armadillo/beta-catenin-like repeat 384 422 IPR000225 GO:0005515
Cpe16g00603 658 MobiDBLite consensus disorder prediction 231 245 - -
Cpe16g00603 658 Pfam U-box domain 259 329 IPR003613 GO:0004842|GO:0016567
Cpe16g00603 658 Coils Coil 95 115 - -
Cpe16g00603 658 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Cpe16g00603 658 SMART arm_5 547 587 IPR000225 GO:0005515
Cpe16g00603 658 SMART arm_5 383 423 IPR000225 GO:0005515
Cpe16g00603 658 SMART arm_5 506 546 IPR000225 GO:0005515
Cpe16g00603 658 SMART arm_5 465 505 IPR000225 GO:0005515
Cpe16g00603 658 SMART arm_5 589 629 IPR000225 GO:0005515
Cpe16g00603 658 SMART arm_5 424 464 IPR000225 GO:0005515
Cpe16g00603 658 SUPERFAMILY RING/U-box 254 334 - -
Cpe16g00603 658 Gene3D - 343 643 IPR011989 -
Cpe16g00603 658 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 394 432 IPR000225 GO:0005515
Cpe16g00603 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 332 IPR013083 -
Cpe16g00603 658 SUPERFAMILY ARM repeat 355 634 IPR016024 -
Cpe16g00603 658 MobiDBLite consensus disorder prediction 230 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00408 Cpe-Chr9:2564268 Cpe16g00603 Cpe-Chr16:6674165 0 dispersed
Cpe13g00377 Cpe-Chr13:4077679 Cpe16g00603 Cpe-Chr16:6674165 1.70E-120 dispersed
Cpe16g00348 Cpe-Chr16:5253031 Cpe16g00603 Cpe-Chr16:6674165 1.07E-149 dispersed
Cpe07g00104 Cpe-Chr7:539617 Cpe16g00603 Cpe-Chr16:6674165 2.76E-31 transposed
Cpe16g00603 Cpe-Chr16:6674165 Cpe02g01239 Cpe-Chr2:11139117 0 wgd
Cpe16g00603 Cpe-Chr16:6674165 Cpe20g00814 Cpe-Chr20:7385804 0 wgd
Cpe16g00603 Cpe-Chr16:6674165 Cpe05g00914 Cpe-Chr5:6010481 1.07E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00603 - - csv:101221150 1100.5