Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00608 CAGTGCTCGAAGATGGCAGAAGGGGAGGATATTCAGCCACTTGTCTGCGACAATGGAACAGGAATGGTCAAGGCTGGCTTTGCTGGAGATGATGCTCCAAGGGCCGTGTTTCCTAGTATAGTAGGTCGACCAAGGCATACCGGTGTGATGGTCGGAATGGGGCAAAAGGATGCGTATGTTGGGGATGAAGCTCAGTCGAAACGTGGTATATTAACCTTGAAATATCCCATAGAGCATGGTATAGTGAGTAATTGGGATGACATGGAGAAAATTTGGCATCATACCTTCTACAATGAACTCCGAGTGGCTCCAGAAGAGCACCCTGTCCTACTCACTGAAGCACCTCTTAACCCAAAGGCAAACCGTGAAAAAATGACCCAAATTATGTTCGAGACCTTCAACACTCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCCCTCTATGCTAGTGGACGCACAACTGGTATTGTTATGGATTCTGGAGACGGTGTCAGTCACACGGTCCCAATTTACGAGGGGTATGCTCTCCCTCATGCCATACTCCGTCTTGACCTTGCTGGCCGTGACCTCACTGATGGCCTTATGAAAATCTTGACTGAACGTGGGTATTCCTTCACCACCTCAGCTGAGCGAGAAATTGTGAGGGACATGAAGGAAAAACTAGCATATATTGCCCTCGACTATGAGCAAGAACTTGAAACTTCCAAAAATGCATCATCTGTCGAGAAGAGCTATGAACTCCCTGATGGGCAGGTTATCACAATTGGTGCAGAACGTTTCCGATGCCCTGAAGTTCTTTTCCAGCCTTCAATGATAGGAATGGAAGCTGCAGGCATCCATGAAACAACATATAACTCCATCATGAAATGCGATGTTGATATCAGGAAGGATCTGTATGGGAATATTGTTCTTAGTGGTGGATCAACCATGTTCCCTGGCATTGCTGACAGAATGAGCAAGGAAATAGCTGCATTAGCTCCAAGCAGCATGAAAATAAAGGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGTGGCTCCATTTTGGCCTCACTTAGCACGTTTCAACAGATGTGGATCGCAAAGGCAGAGTACGATGAGTCTGGTCCATCCATTGTGCACAGGAAATGCTTCTGA 1146 46.68 QCSKMAEGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDGLMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKNASSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIAALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6696018 6697966 + Cp4.1LG16g05910.1 Cpe16g00608 482983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00608 381 ProSitePatterns Actins signature 1. 59 69 IPR004001 -
Cpe16g00608 381 SMART actin_3 11 381 IPR004000 -
Cpe16g00608 381 ProSitePatterns Actins signature 2. 362 370 IPR004001 -
Cpe16g00608 381 Gene3D - 14 375 - -
Cpe16g00608 381 PANTHER ACTIN 5 380 IPR004000 -
Cpe16g00608 381 SUPERFAMILY Actin-like ATPase domain 10 158 IPR043129 -
Cpe16g00608 381 SUPERFAMILY Actin-like ATPase domain 153 381 IPR043129 -
Cpe16g00608 381 Gene3D - 144 344 - -
Cpe16g00608 381 PANTHER ACTIN-97 5 380 - -
Cpe16g00608 381 Pfam Actin 9 381 IPR004000 -
Cpe16g00608 381 CDD NBD_sugar-kinase_HSP70_actin 14 187 - -
Cpe16g00608 381 ProSitePatterns Actins and actin-related proteins signature. 110 122 IPR020902 -
Cpe16g00608 381 Gene3D Actin; Chain A, domain 4 186 277 - -
Cpe16g00608 381 PRINTS Actin signature 146 165 IPR004000 -
Cpe16g00608 381 PRINTS Actin signature 121 134 IPR004000 -
Cpe16g00608 381 PRINTS Actin signature 242 258 IPR004000 -
Cpe16g00608 381 PRINTS Actin signature 67 89 IPR004000 -
Cpe16g00608 381 PRINTS Actin signature 55 66 IPR004000 -
Cpe16g00608 381 PRINTS Actin signature 32 41 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00558 Cpe-Chr9:3857267 Cpe16g00608 Cpe-Chr16:6696018 6.60E-60 dispersed
Cpe01g02297 Cpe-Chr1:19396785 Cpe16g00608 Cpe-Chr16:6696018 0 wgd
Cpe01g01096 Cpe-Chr1:6478315 Cpe16g00608 Cpe-Chr16:6696018 0 wgd
Cpe01g00187 Cpe-Chr1:1058392 Cpe16g00608 Cpe-Chr16:6696018 0 wgd
Cpe10g00886 Cpe-Chr10:4982089 Cpe16g00608 Cpe-Chr16:6696018 0 wgd
Cpe13g00859 Cpe-Chr13:7503106 Cpe16g00608 Cpe-Chr16:6696018 0 wgd
Cpe16g00608 Cpe-Chr16:6696018 Cpe19g00354 Cpe-Chr19:3094670 0 wgd
Cpe16g00608 Cpe-Chr16:6696018 Cpe05g00918 Cpe-Chr5:6032163 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00608 K10355 - csin:114318813 748.814