Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00619 ATGGCCATTAATATTCCTCTCTGTATTGCTTCTTTTCTCTCTTTTTTTTTACTCGTCGAAGCCAGAATCCCCGGAATTTACTCCGGCGGCCCATGGCAGAGCGCTCACGCCACCTTCTACGGTGGCTCCGATGCTTCCGGCACAATGGGCGGCGCTTGTGGGTATGGGAACTTGTACAGCCAAGGGTATGGAGTTAACACGGCGGCGCTGAGTACGGCTCTGTTCAATAAGGGTCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGTGCTAATGACCCACGGTGGTGCCATTCCGGCAGCCCGTCGATTTTGATTACCGCTACTAATTTCTGCCCTCCGAATTATGCGCTGCCCAACGACAATGGCGGCTGGTGTAACCCTCCTCGTACCCACTTCGACCTCGCCATGCCCATGTTCCTCAAAATCGCTGAGTACCGCGCCGGTATCGTCCCCGTCTCTTACCGCCGAGTGCCATGCCGGAAGCACGGAGGAATCAGGTTCACAATCAACGGCTTTCGTTACTTCAATCTGGTTCTAATCACCAACGTGGCAGGTGCAGGGGATATCGTACGGGTTAGCGTTAAAGGTACAAGAACCGGGTGGATGAGCATGACACGAAACTGGGGGCAAAATTGGCAATCCAATGCCGTATTAGTGGGCCAAGCTCTGTCGTTTAGAGTAACCGGCAGCGACCGTCGAACCTCAACGTCATGGAACATCGTGCCCGCCCATTGGCAGTTCGGCCAAACTTTCACCGGGAAAAACTTCCGTGTTTAA 777 53.54 MAINIPLCIASFLSFFLLVEARIPGIYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKHGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTRTGWMSMTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPAHWQFGQTFTGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6736333 6737681 - Cp4.1LG16g06260.1 Cpe16g00619 482994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00619 258 PANTHER EXPANSIN-A15 7 257 IPR002963 GO:0009664
Cpe16g00619 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Cpe16g00619 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Cpe16g00619 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Cpe16g00619 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Cpe16g00619 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Cpe16g00619 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Cpe16g00619 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Cpe16g00619 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Cpe16g00619 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Cpe16g00619 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Cpe16g00619 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Cpe16g00619 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Cpe16g00619 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Cpe16g00619 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Cpe16g00619 258 PANTHER EXPANSIN 7 257 - -
Cpe16g00619 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Cpe16g00619 258 Gene3D - 164 256 IPR036749 -
Cpe16g00619 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Cpe16g00619 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Cpe16g00619 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Cpe16g00619 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Cpe16g00619 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Cpe16g00619 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Cpe16g00619 258 SMART dpbb_1 67 154 IPR007112 -
Cpe16g00619 258 Gene3D - 22 160 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01971 Cpe-Chr1:16866034 Cpe16g00619 Cpe-Chr16:6736333 9.96E-45 dispersed
Cpe10g00250 Cpe-Chr10:1461913 Cpe16g00619 Cpe-Chr16:6736333 9.52E-102 dispersed
Cpe13g00535 Cpe-Chr13:5442608 Cpe16g00619 Cpe-Chr16:6736333 4.33E-43 dispersed
Cpe13g01039 Cpe-Chr13:8521044 Cpe16g00619 Cpe-Chr16:6736333 3.72E-124 dispersed
Cpe15g00656 Cpe-Chr15:7229662 Cpe16g00619 Cpe-Chr16:6736333 1.15E-92 dispersed
Cpe01g02305 Cpe-Chr1:19451816 Cpe16g00619 Cpe-Chr16:6736333 9.30E-90 wgd
Cpe01g01088 Cpe-Chr1:6418949 Cpe16g00619 Cpe-Chr16:6736333 7.81E-66 wgd
Cpe01g00178 Cpe-Chr1:1002796 Cpe16g00619 Cpe-Chr16:6736333 1.32E-95 wgd
Cpe10g00890 Cpe-Chr10:5008797 Cpe16g00619 Cpe-Chr16:6736333 3.95E-97 wgd
Cpe16g00619 Cpe-Chr16:6736333 Cpe19g00348 Cpe-Chr19:3058720 1.97E-97 wgd
Cpe16g00619 Cpe-Chr16:6736333 Cpe02g01228 Cpe-Chr2:11088874 5.79E-98 wgd
Cpe16g00619 Cpe-Chr16:6736333 Cpe20g00823 Cpe-Chr20:7443824 1.12E-96 wgd
Cpe16g00619 Cpe-Chr16:6736333 Cpe05g00925 Cpe-Chr5:6080077 1.97E-180 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00619 - - csv:101203979 523.472