Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00623 ATGGATCCAAACCTCAACGCTTTCACAGATCGCATGGCTGATTATCAGACCTCTCTAACCCAATCATACGATGATGGGTTTAGACTAAATGATTTTGAATTCAACGACCCATCTCCAGATTTTGTTCCTTTCGTTGATAATTCCCTTTTCCCCTACCAACCAAACCCCAACAAGTTTCCAGGGGCTGTGGATTTGAACTTGGGTGGGGTGGCTTCAGGGCAAAGCCCTGATGGCGACTCTTCCTCGGACGAGTTAGACTTCAGGGAAAGTGTTCTTAAGTACATCAGCCAAATGCTGATGGAAGAGAATTTGGAGGAGAAGCCTTGCATGTTTTATGATCCTTTGGGTCTTGAAAATACCGAGAAATCTTTCTATGATGCTCTTGGTAAGAACTACCCTCCCCCTTCGCCTAACCAACCTCCCCTAGATTGCGAGAGCTCTGAAGATGTTTGTCGTGGAAGCGACAGTGATCGTACAAGTACTGCTGTTAGTGCTGCCAACAGCAATTCGCCTGACCCCCAATGGGTTGTTGATCCTGGAGAAAGTAAGTCTTCTATACTAACAAGATCTATTCCTAGTAGTTCGTATCAAAGCAGCCTAACTATTAATAGTCATGAGCTTGTCACGGAGCTGTTGGCTCAGAATATCTTTAGTGATAGCACATCCATCTTGCAATATCAAAAAGGGTTGGAGGAGGCAAGTAAGTTTCTCCCAGTGGGTAATCAGCTGAATATCGATCTTGGCAGTGGCAAATTCACAGGAGTAGCTTCTAAGGTAACGGATACAACAGAGAATTCGCCTAATGGATCAAAGAGAAGGAAGAATCGTGGACCTGAAGCTATAGATTTGGATTCAGAAGAAGGGAGAAAAAACAAGCATGCAACCATTTATGGGGATGAGGAAGAATTAACTGACATGTTCGATAAGGTTCTACTCCATGATTGTGGAAGTGAGGCCTCTGCAAATGGTGGATGTGAGAAATTGCAGAATAATCGACAAGTTCATGGTGGATCTAATGCTGGGAAAGCTCGGGAAAAGAAACAGGATAAGAGAAATAACTCTGTGGATTTGAGGAATCTTCTGATATTATGTGCACAAGCTGTGTCTTCTGATGACCGTAGGATTGCGTATGAACTACTTAAGCAGATTAGACAGCATTCTACAACGACTGGGGATGGTTCCCAAAGGATGGCTCATTTCTTTTCTAATGCTCTTGAGGCTCGGATGGTTGGCACTGGCACAGGAAGTAGAATTTACTATGATTCACTAGCTCAAAGCAACATTTCAGCGGCTGATATGTTGAAAGCTTACCAAGCTCACCTTTCATCCTGCCCTTTTAAGAAGCTCTCTCTCTTTTTCATGATCAAAATGATTTTGAAGGTTGCTGAAAATGCTAAAAGTCTGCATGTTATTGATTTTGGCATTTGCTATGGTTTCCTATGGCCAATGTTAATTCAGTTTCTTGCACTACTGCCTGATGGTCCACCCAAGCTACGCATTACTGGTATTGATTATCCTCTACCAGGATTTCGTCCAGAAGAAAAGATTCAAGAGTCAGGTCGCCGTTTGGCGAAATACTGTGAGCGCTTTAAAGTTCCTTTTCAATATCAAGCCATAGCATCAAATAACTGGGAAACTATCCAAGTCGAGGACTTAAAGCTTGATAGCAATGACGTGCTAGTTGTGAACTGTTTCTACAGGTTTAACAGCCTACTTGATGAAACTGTCGAAGAAAGTAGTCCAAGGGATATTGTTCTACGTTTAATAAGGAAGATGAATCCAAACATCTTTGTCCACTCTGTGGTTAATGGATCCTACAATGCACCCTTCTTCATAACACGATTCAGGGAAGCACTCTTCCACTTCTCTGCATTGTATGATGCTTTAGACGTTAATTTACCTCGAGACAGTGAAGAGAGGATGATGCTAGAGAGAGAATTTCTCGGTCGCCAAATTATGAACGTAGTAGCATGTGAGGGAGTTCAGAGGGTTGAGAGGCCTGAACCCTATAAGCAGTGGCAGGTTCGGTGTATGAGGGCAGGTTTCAAGCAGCTTCCTTTGGACAAGGAGATCATGTGCAAGTTTAGGACCAAGTTAACATCCCATTACCACAAAGATTTTGTACTAGATGAAGATGAGGGCTGGATGCTTCAAGGATGGAAAGGACGGATAGTCTATGCTTCTTGTTGTTGGGTGCCTGCATAG 2205 43.08 MDPNLNAFTDRMADYQTSLTQSYDDGFRLNDFEFNDPSPDFVPFVDNSLFPYQPNPNKFPGAVDLNLGGVASGQSPDGDSSSDELDFRESVLKYISQMLMEENLEEKPCMFYDPLGLENTEKSFYDALGKNYPPPSPNQPPLDCESSEDVCRGSDSDRTSTAVSAANSNSPDPQWVVDPGESKSSILTRSIPSSSYQSSLTINSHELVTELLAQNIFSDSTSILQYQKGLEEASKFLPVGNQLNIDLGSGKFTGVASKVTDTTENSPNGSKRRKNRGPEAIDLDSEEGRKNKHATIYGDEEELTDMFDKVLLHDCGSEASANGGCEKLQNNRQVHGGSNAGKAREKKQDKRNNSVDLRNLLILCAQAVSSDDRRIAYELLKQIRQHSTTTGDGSQRMAHFFSNALEARMVGTGTGSRIYYDSLAQSNISAADMLKAYQAHLSSCPFKKLSLFFMIKMILKVAENAKSLHVIDFGICYGFLWPMLIQFLALLPDGPPKLRITGIDYPLPGFRPEEKIQESGRRLAKYCERFKVPFQYQAIASNNWETIQVEDLKLDSNDVLVVNCFYRFNSLLDETVEESSPRDIVLRLIRKMNPNIFVHSVVNGSYNAPFFITRFREALFHFSALYDALDVNLPRDSEERMMLEREFLGRQIMNVVACEGVQRVERPEPYKQWQVRCMRAGFKQLPLDKEIMCKFRTKLTSHYHKDFVLDEDEGWMLQGWKGRIVYASCCWVPA 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6751531 6753735 + Cp4.1LG16g06140.1 Cpe16g00623 482998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00623 734 MobiDBLite consensus disorder prediction 126 180 - -
Cpe16g00623 734 PANTHER SCARECROW-LIKE PROTEIN 34 72 733 - -
Cpe16g00623 734 MobiDBLite consensus disorder prediction 323 351 - -
Cpe16g00623 734 Pfam GRAS domain family 357 731 IPR005202 -
Cpe16g00623 734 ProSiteProfiles GRAS family profile. 348 732 IPR005202 -
Cpe16g00623 734 MobiDBLite consensus disorder prediction 256 291 - -
Cpe16g00623 734 MobiDBLite consensus disorder prediction 267 291 - -
Cpe16g00623 734 MobiDBLite consensus disorder prediction 323 337 - -
Cpe16g00623 734 MobiDBLite consensus disorder prediction 156 180 - -
Cpe16g00623 734 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 72 733 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00623 Cpe-Chr16:6751531 Cpe02g00884 Cpe-Chr2:6289824 2.49E-66 dispersed
Cpe16g00623 Cpe-Chr16:6751531 Cpe02g01222 Cpe-Chr2:11052449 0 wgd
Cpe16g00623 Cpe-Chr16:6751531 Cpe20g00829 Cpe-Chr20:7491328 8.61E-122 wgd
Cpe16g00623 Cpe-Chr16:6751531 Cpe03g00113 Cpe-Chr3:570245 0 wgd
Cpe16g00623 Cpe-Chr16:6751531 Cpe05g00928 Cpe-Chr5:6099157 0 wgd
Cpe16g00623 Cpe-Chr16:6751531 Cpe08g01167 Cpe-Chr8:8658812 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50732 PF03514 GRAS 2.00E-105 CL0063 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00623 - - mcha:111017073 1147.11