Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00700 ATGTTAGGGATGCCGATGGTGAAGCTGGATGTGATGCATCGCCACCATCCACATGTTCAGGAGAAGCTTTATGGTGAACGGAGGAGTCTAGGAAGCACCGATCGCTTCAGAGATATTCACGAGCACGACCACAACCGCCAACGCTCAATCTCCACATCGATGAAAATGAGCAAGACGGATCGTCAGCTTCCTATGCCGTCATCTACACCGATACAACTGAAAATAAGCTCAGGCTTCGATTTTGGAACTAATGAGTATTTTGTTCAGTTCAGAGTCGGAACGCCGCCGCAGAAATTTTTGTTGATTGTGGACACCGGGAGTGACCTAACCTGGTTGAAATGTAGATATCGGCGGTGCTTGGGAAATTGCACCGCCCACGCTCATCATAAGAGCCCGAATCATTCATCCTCTTTCAAATTGATTACCTGCGGCTCAGATTTCTGCCTCGGTGATCTCCAACTACTCTTCGCCATCCCGGATTGTGAAGTTCCTTCCAACCCTTGCGTCTATGATTACAGCTACATAGGAGGAGGGGCTGCGACGGGATTGTTCGCAAACGAGACGGTAACCGTAGGCCTCACAAACGGAAAGGAGAAACAGCTCCATGATACTCTAATCGGCTGCACCGAACTGTTCAATGCAATGCAGTTGAAAGGAGTCGACGGCATCCTTGCCTTAGGCACTGGCGCACACTCCTTCGCCCACAGAGCCGCTCTAGACAAAAACGGCGGTGGCTTCTCCTACTGCCTCATCGACCATCTCAGCCACCACAGCGCCACCAGCTACCCCCCCGCCGAACCCCTCTCTGTTGCTCCAGTCGGCAACATGACCTTCATCAACCTCCACCTCGGCGACGCTTTCAACAGCTACTACGGCGTGGGGCTCATCGGAATCTCTATCATGCTCACCGCACCCGCGTTCGACGTGTTCATAGAAGCCATGGTTCAAAAGCTGAAGAAATTCCAGCAAATCCTTGCGGATCCCTTCGCTTATTGCTTCAATAACACCGAATACTCCCATGAAATGGCCCCCAAGCTTCGATTCCATTTGGAGAAAGGGGTGGTGTTCGAGCCGCCGCCCAAAAGCTACATTGTGAAGGTGGACGATATCTTGTGTCTTGGCTTCACTTCTAATTCCTTTTCCAGACACCAATATCATCGGCAATATTCTTCAGCAAAATTTCCTTCGGCAATTTGA 1197 50.71 MLGMPMVKLDVMHRHHPHVQEKLYGERRSLGSTDRFRDIHEHDHNRQRSISTSMKMSKTDRQLPMPSSTPIQLKISSGFDFGTNEYFVQFRVGTPPQKFLLIVDTGSDLTWLKCRYRRCLGNCTAHAHHKSPNHSSSFKLITCGSDFCLGDLQLLFAIPDCEVPSNPCVYDYSYIGGGAATGLFANETVTVGLTNGKEKQLHDTLIGCTELFNAMQLKGVDGILALGTGAHSFAHRAALDKNGGGFSYCLIDHLSHHSATSYPPAEPLSVAPVGNMTFINLHLGDAFNSYYGVGLIGISIMLTAPAFDVFIEAMVQKLKKFQQILADPFAYCFNNTEYSHEMAPKLRFHLEKGVVFEPPPKSYIVKVDDILCLGFTSNSFSRHQYHRQYSSAKFPSAI 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7204525 7206252 + Cp4.1LG16g06900.1 Cpe16g00700 483075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00700 398 Pfam Xylanase inhibitor C-terminal 301 378 IPR032799 -
Cpe16g00700 398 Pfam Xylanase inhibitor N-terminal 86 262 IPR032861 -
Cpe16g00700 398 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 101 112 IPR001969 GO:0004190|GO:0006508
Cpe16g00700 398 PANTHER ASPARTIC PROTEINASE NANA, CHLOROPLAST 301 378 - -
Cpe16g00700 398 Gene3D Acid Proteases 298 385 IPR021109 -
Cpe16g00700 398 PANTHER ASPARTIC PROTEINASE NANA, CHLOROPLAST 9 300 - -
Cpe16g00700 398 Gene3D Acid Proteases 60 262 IPR021109 -
Cpe16g00700 398 ProSiteProfiles Peptidase family A1 domain profile. 86 398 IPR033121 -
Cpe16g00700 398 PANTHER OS07G0603500 PROTEIN-RELATED 9 300 - -
Cpe16g00700 398 PANTHER OS07G0603500 PROTEIN-RELATED 301 378 - -
Cpe16g00700 398 SUPERFAMILY Acid proteases 78 380 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00700 - - - cpep:111777066 768.844
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01021 Cpe16g00700 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01007 Cpe-Chr5:6577056 Cpe16g00700 Cpe-Chr16:7204525 2.83E-109 dispersed
Cpe16g00700 Cpe-Chr16:7204525 Cpe13g00033 Cpe-Chr13:270438 1.93E-34 dispersed
Cpe16g00700 Cpe-Chr16:7204525 Cpe05g01021 Cpe-Chr5:6657366 2.76E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1187 . . . . . . . . . . . . . . . . Cpe16g00700 . . . . . . . Cla02g01844 Cam02g1950 Cec02g1977 Cco02g2016 Clacu02g1931 Cmu02g1880 Cre02g2192 . . . . . . . Cme11g01660 . . . . . . . . Sed01g0777 . . . . . . . Cpe05g01021 Bhi10g00915 Tan05g0569 Cmetu11g0770 . Hepe08g0662 . . . . . . . . . . Csa06g01136 Chy11g01056 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009402 0 1 1 1 1 1 0 1 1 1 1 1 3 1 1 3 1 1 3 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00700 Cpe_Chr16 FPKM 5.647262 7.280798 9.238262 8.574346 12.333506 10.769835 11.842173 12.20989 10.215729 11.484389