Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00702 ATGGCTCCCATGACCCTCCCTCCAGGCTTTCGCTTCCACCCCACAGATGAAGAGCTTGTTGCTTACTATCTGGATAGAAAGATCAATGGCCGCTCCATCGAGCTCGAGATCATCCCCGAGATCGATCTTTATAAGTGCGAACCTTGGGAATTACCTGATAAGTCGCTTTTGCCAAGCATAGATATGGAGTGGTACTTCTATAGTCCTCGGGATCGGAAGTACCCGAATGGGTCGAGAACGAATCGGGCAACCAGAGGCGGATATTGGAAGGCTACTGGAAAAGATCGTGTGGTTCAGTCGCAGAAACGGGTGGTTGGAATGAAGAAGACTTTGGTGTATTATAAAGGAAGAGCTCCTCATGGAATCAGAACCAATTGGGTTATGCACGAGTATCGTCTTCTTCATTCTCAACACGCCACCGCGGCGTCGTGTTCTTCGACAAAGGACTCTTATGCATTGTGTCGTGTATTCAAGAAAACAACCCAAATACCGAAACCCGTAAGGGAAAAGGCAAGCGGAGTTGATGTCGAAGCACCGGTGTGGCAGATGGGAGACGAGCAAGACATGCAAGTCGACGAGAGCGGAGGGGCGGAAAGCTCGAGAGGAGGGATAGAAAGCAATGAAGATGGTGATAGTTTTGATCACCTTCTTCATGAGTACAACCCTAAAATCTTCAGCTCTGAAAACTCTTCCTCCGATCTCACACAAGGGAATGTCGCCGACGACATGCCGGCTCCGGTGGTCTCCGATAACGAAGCCAATAGTGCAGCAAATAATCTGTATCCAATTCACATTGAATGCCCTTCAAATTTCATACAGATACCAAGCAATCTTCATTACCAACATCCTTACTACCCGCCATTGGAGCTCGAGGACTTCCCTCAGCTGAACATAATGGGGGAAACGAAGACATGGATGAAAGTCGAGTGCATGGACGAGTACATGAAGTTCGAGAAGTTTAGAGAGTCGATGAATGGAAGTTTAGAGGAGATTTTATCTGCATGTAATGTTCCCATGCAAGAAGATCATAATCTCCAGCAGTACTCTTCCTTATTACAGTAA 1062 47.08 MAPMTLPPGFRFHPTDEELVAYYLDRKINGRSIELEIIPEIDLYKCEPWELPDKSLLPSIDMEWYFYSPRDRKYPNGSRTNRATRGGYWKATGKDRVVQSQKRVVGMKKTLVYYKGRAPHGIRTNWVMHEYRLLHSQHATAASCSSTKDSYALCRVFKKTTQIPKPVREKASGVDVEAPVWQMGDEQDMQVDESGGAESSRGGIESNEDGDSFDHLLHEYNPKIFSSENSSSDLTQGNVADDMPAPVVSDNEANSAANNLYPIHIECPSNFIQIPSNLHYQHPYYPPLELEDFPQLNIMGETKTWMKVECMDEYMKFEKFRESMNGSLEEILSACNVPMQEDHNLQQYSSLLQ 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7220040 7222462 + Cp4.1LG16g07040.1 Cpe16g00702 483077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00702 353 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Cpe16g00702 353 Coils Coil 348 353 - -
Cpe16g00702 353 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 165 - -
Cpe16g00702 353 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Cpe16g00702 353 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Cpe16g00702 353 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Cpe16g00702 353 MobiDBLite consensus disorder prediction 227 250 - -
Cpe16g00702 353 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 165 - -
Cpe16g00702 353 MobiDBLite consensus disorder prediction 178 213 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01027 Cpe16g00702 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00534 Cpe-Chr13:5434330 Cpe16g00702 Cpe-Chr16:7220040 2.03E-90 dispersed
Cpe15g00353 Cpe-Chr15:4743992 Cpe16g00702 Cpe-Chr16:7220040 6.71E-69 dispersed
Cpe16g00702 Cpe-Chr16:7220040 Cpe09g00398 Cpe-Chr9:2482486 5.79E-64 dispersed
Cpe16g00702 Cpe-Chr16:7220040 Cpe05g01027 Cpe-Chr5:6733243 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50738 PF02365 NAM 3.70E-39 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00702 - - csv:101203964 630.172