Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00704 ATGACTATGATGGTCGCTGCAAGAGCAATCGCAACCGCAACAGCTCGATCAGTGGTGCGATCGACTAGGTTCCCTCTTCAATCTCCATCGCTATATGTGTTTGCTCAGCGGAAATCTCACTCCCACACTCTTCTCATTCGTCAGATGAGCTCTGAGGCGCCGAGCGTTGTTACTCGTCTTCAAAGTTCTGGATTGTTTCGAAGCCAAGGTCTTATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCTTTAAGGTTCATAATCCAGCCAATGGTGAAGTTATAACCAATGTCCCGCTCATGGGCAAAAGGGAAACCGATGATGCTATTTCTTCAGCTCATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGCTTACGGAAATGGTATGAGCTCCTAATTGCCCACAAAAAAGAGCTTGGACAACTGATAACCTTGGAGCAAGGAAAACCCTTAAAGGAAGCTATGGGTGAGGTTACCTATGGAGCCAGCTTTATTGAGTTCTTTTCTGAGGAAGCAAAACGAGTATATGGTGACATAATCTCACCAACTTTAGCGGATCGACGACTCTTTGTCTTGAAGCAGATAAATTCATGGAAATTTATGTCTTGTTCTGCTTTGAGTTTCCTGTATGAGCTCCTAATTGCCCACAAAAAAGAGCTTGGACAACTGATAACCTTGGAGCAAGGAAAACCCTTAAAGGAAGCTATGGGTGAGGTTACCTATGGAGCCAGCTTTATTGAGTTCTTTTCTGAGGAAGCAAAACGAGTATATGGTGACATAATCTCACCAACTTTAGCGGATCGACGACTCTTTGTCTTGAAGCAGCCAGTTGGAGTTGTTGGTGTTATTACCCCTTGGAACTTTCCATTGGCTATGATTACAAGAAAGTTGATGTATGCTATTGAAAAAACCTTATCTTCTGTTACCCTTGCATTCCAGGTTGGACCTGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCTGCGGAACTTACCCCCTTGACAGCTTTAGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCTGCAGGAGTCGTGAATGTGGTTATGGGAGATGCTCCAGCTGTTGGGGATGCTATACTTGCAAGTTCTCAGGTAAGAAAGATCACGTTTACTGGCTCAACAGCAGTTGGAAAAAAGTTGATGGCAGGAGCTGCTGGAACTGTTAAAAGGGTGTCCTTAGAACTTGGTGGTAATGCCCCTTGCATAGTCTTTGATGACGCAGATGTGGATGTTGCAGTAAAAGGAGCTATTGCAGCGAAGTTCCGAAATACTGGACAGACTTGTGTTTGTGCGAATAGAATTTTTGTTCAAGAAGGTATATACGAGAAATTTGCTGATGCTTTCTCAAAAGCTGTGCAAAGTCTGCAAGTTGGTGATGGTTTCGGTGAAGGTGTATCTCTGGGTCCTTTAATTAATGAAGCTGCCGTGCAGAAGGTTGAGAAATTTCTTCAAGATGCCACCACAAAGGGAGCAAAAGTTCTTCTTGGAGGTAAAAGACACAGCCTTGGAATGACATTTTTTGAGCCTACAGTTCTTACTGACGTGAAGAATGACATGCTTTTATCTAGGGAGGAAATATTTGGTCCCGTGGCACCCTTACTGCCATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCTAATGACACCAATGCAGGATTAGCGGCTTACATATTCACAAATAGTATTCAACGTTCATGGAGAGTGACTGAAGCTCTTGAATATGGATTGGTTGGTGTTAATGAAGGCTTGATTTCTACAGAGGTGGCTCCATTTGGTGGCGTTAAACAGTCGGGCCTTGGTCGGGAGGGGTCAAAATATGGGCTGGACGAGTATCTTGAGCTGAAATATGTTTGCATGGGGAACATGGGCGGCAACTAG 1926 44.5 MTMMVAARAIATATARSVVRSTRFPLQSPSLYVFAQRKSHSHTLLIRQMSSEAPSVVTRLQSSGLFRSQGLIGGKWIDAYDGKTFKVHNPANGEVITNVPLMGKRETDDAISSAHDAFKSWSKLTAADRSNRLRKWYELLIAHKKELGQLITLEQGKPLKEAMGEVTYGASFIEFFSEEAKRVYGDIISPTLADRRLFVLKQINSWKFMSCSALSFLYELLIAHKKELGQLITLEQGKPLKEAMGEVTYGASFIEFFSEEAKRVYGDIISPTLADRRLFVLKQPVGVVGVITPWNFPLAMITRKLMYAIEKTLSSVTLAFQVGPALACGCTVVIKPAELTPLTALAAAELSLQAGIPAGVVNVVMGDAPAVGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPCIVFDDADVDVAVKGAIAAKFRNTGQTCVCANRIFVQEGIYEKFADAFSKAVQSLQVGDGFGEGVSLGPLINEAAVQKVEKFLQDATTKGAKVLLGGKRHSLGMTFFEPTVLTDVKNDMLLSREEIFGPVAPLLPFRTEEEAIALANDTNAGLAAYIFTNSIQRSWRVTEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGLDEYLELKYVCMGNMGGN 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7228718 7241335 - Cp4.1LG16g07130.1 Cpe16g00704 483079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00704 641 SUPERFAMILY ALDH-like 213 637 IPR016161 GO:0016491
Cpe16g00704 641 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 213 638 - -
Cpe16g00704 641 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 59 203 IPR016162 GO:0016491
Cpe16g00704 641 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 214 627 IPR016162 GO:0016491
Cpe16g00704 641 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 63 202 - -
Cpe16g00704 641 Pfam Aldehyde dehydrogenase family 214 309 IPR015590 GO:0016491
Cpe16g00704 641 Pfam Aldehyde dehydrogenase family 318 633 IPR015590 GO:0016491
Cpe16g00704 641 Pfam Aldehyde dehydrogenase family 76 199 IPR015590 GO:0016491
Cpe16g00704 641 SUPERFAMILY ALDH-like 51 197 IPR016161 GO:0016491
Cpe16g00704 641 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 437 448 IPR016160 GO:0016491
Cpe16g00704 641 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 213 638 - -
Cpe16g00704 641 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 413 602 IPR016163 GO:0016620
Cpe16g00704 641 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 63 202 - -
Cpe16g00704 641 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 409 416 IPR029510 GO:0016491
Cpe16g00704 641 CDD ALDH_F5_SSADH_GabD 87 635 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00704 K17761 SSADH; succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24] - csv:101217352 704.901
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01029 Cpe16g00704 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00552 Cpe-Chr14:3505085 Cpe16g00704 Cpe-Chr16:7228718 2.63E-36 dispersed
Cpe15g00387 Cpe-Chr15:5089964 Cpe16g00704 Cpe-Chr16:7228718 2.52E-08 dispersed
Cpe16g00704 Cpe-Chr16:7228718 Cpe18g00825 Cpe-Chr18:7639618 3.72E-07 dispersed
Cpe16g00704 Cpe-Chr16:7228718 Cpe05g01029 Cpe-Chr5:6743169 1.52E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1169 . . . . . . . . . . . . . . . . Cpe16g00704 . . . . . . . Cla02g01832 Cam02g1941 Cec02g1968 Cco02g2007 Clacu02g1921 Cmu02g1870 Cre02g2183 . . . . . . . Cme11g01643 . . . . . . . . Sed05g3313 . . . . . . . Cpe05g01029 Bhi10g00929 Tan05g0579 Cmetu11g2423 . Hepe08g0653 . . . . . . . . . . Csa06g01146 Chy11g01046 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g01139 . 6 495 Aldehyde Dehydrogenase Gene Family AT3G24503 69.0 3.0e-205 711.8
Cpe18g00444 . 1 472 Aldehyde Dehydrogenase Gene Family AT3G24503 67.0 3.1e-194 675.2
Cpe11g00003 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 3.8e-160 562.0
Cpe07g00001 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 53.9 4.2e-159 558.5
Cpe04g01548 . 33 494 Aldehyde Dehydrogenase Gene Family AT3G24503 54.0 3.4e-145 512.3
Cpe07g00001 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 77.0 7.2e-250 860.1
Cpe11g00003 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.5 1.7e-246 849.0
Cpe04g01548 . 9 496 Aldehyde Dehydrogenase Gene Family AT3G48000 80.2 6.6e-243 837.0
Cpe04g01139 . 17 495 Aldehyde Dehydrogenase Gene Family AT3G48000 53.2 1.0e-155 547.4
Cpe18g00444 . 18 472 Aldehyde Dehydrogenase Gene Family AT3G48000 51.3 4.1e-144 508.8
Cpe07g00001 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.8 1.6e-169 592.8
Cpe11g00003 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.4 1.4e-168 589.7
Cpe04g01548 . 7 342 Aldehyde Dehydrogenase Gene Family AT1G23800 74.1 7.1e-157 550.8
Cpe04g01139 . 17 345 Aldehyde Dehydrogenase Gene Family AT1G23800 53.8 4.2e-101 365.5
Cpe02g00556 CCT,ECH 22 529 Aldehyde Dehydrogenase Gene Family AT4G34240 60.2 3.8e-174 608.6
Cpe06g00619 CCT,ECH 7 465 Aldehyde Dehydrogenase Gene Family AT4G34240 59.7 6.0e-164 574.7
Cpe06g00618 . 3 517 Aldehyde Dehydrogenase Gene Family AT4G34240 56.0 1.9e-162 569.7
Cpe02g00556 CCT,ECH 117 527 Aldehyde Dehydrogenase Gene Family AT1G44170 71.0 1.4e-176 616.3
Cpe06g00618 . 108 515 Aldehyde Dehydrogenase Gene Family AT1G44170 69.3 3.5e-167 585.1
Cpe06g00619 CCT,ECH 72 465 Aldehyde Dehydrogenase Gene Family AT1G44170 66.9 4.3e-157 551.6
Cpe05g00500 . 59 475 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 2.0e-117 419.9
Cpe14g00552 . 5 477 Aldehyde Dehydrogenase Gene Family AT4G36250 61.7 5.3e-183 637.9
Cpe05g00500 . 5 477 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 1.7e-157 553.1
Cpe16g00704 CCT 39 638 Aldehyde Dehydrogenase Gene Family AT1G79440 64.1 3.9e-216 748.0
Cpe05g01029 CCT 39 469 Aldehyde Dehydrogenase Gene Family AT1G79440 60.6 5.4e-165 578.2
Cpe04g00361 . 12 591 Aldehyde Dehydrogenase Gene Family AT2G14170 65.2 2.4e-209 725.7
Cpe10g00532 . 56 459 Aldehyde Dehydrogenase Gene Family AT2G14170 69.1 9.7e-171 597.4
Cpe18g00825 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.8 1.8e-250 862.1
Cpe18g00825 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.1 1.3e-253 872.5
Cpe07g00985 . 1 390 Aldehyde Dehydrogenase Gene Family AT2G24270 66.9 1.2e-177 620.2
Cpe07g01153 . 2 371 Aldehyde Dehydrogenase Gene Family AT2G24270 68.1 1.5e-177 619.8
Cpe20g00200 . 32 554 Aldehyde Dehydrogenase Gene Family AT5G62530 80.7 5.9e-263 903.7
Cpe12g00317 CST 1 600 Aldehyde Dehydrogenase Gene Family AT3G66658 72.1 9.8e-264 906.4
Cpe17g00066 CST 1 517 Aldehyde Dehydrogenase Gene Family AT3G66658 65.0 9.5e-227 783.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004697 3 1 1 3 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 3 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00704 Cpe_Chr16 FPKM 22.253725 23.633211 15.812256 15.438362 15.188945 16.701075 17.021675 13.253729 15.53726 15.093793