Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00706 ATGCAGCAGCTTCAAGCCCGCCTGCTAAAGTCTCTTTCCGTTTCTTCTTCACCGGCCGCCTCAACAATCCAAGAAATCGCTTCCGCTCGCCCCAAAGGTTTATCCAAGGTTGTGCTGAAAAAGGGGAAGACACAGCTCTTTAAAGATGGGAGTCCGATGGTGTACAGTGGAGCTGTTGATAGAATAATTGGAAGGCCACCGCCAAAAACTGGAGATGTTGTCCTGGTAGCCGATGGGGCTGAGAAACCTATAGGGTGGGGTTTGTATAACTCAGTTTCCATGTTCTCTGTCAGATTGATGCAGCTGGAAGAGGAGGCAGCTAGAGATCCTTCGTGCACATTAGATATGCAGAAACTGATTGAAACTAGGATACATACTGCTAGAGAATTAAGAAAGAGCTTGGGACTTCCGTCGGCCAGTACGAATGCATACCGTCTCGTTAATAGTGAAGGAGATAGATTGTCAGGACTAATCATTGACGTCTTTGGAGATTTAGCAGTTGTGGCATCATCGGCTGCTTGGGTGGAGAAGTACAAAGCTGAAATCGAGGACTGTGTTCGTGGAATTGATGAAATCAATCATGTGAAATGGAGACCATCAGTGGAAATTCTGAAAGAAGAAGGGATAGATGTGTCTGAATTGAAGGATACAAATCCGTCTATTTATCCTGAAAGAACAAAGGTAACGGAGAATGGAATTTTCTATGCCATTTCACTTGAAGGCCAGAAAACAGGGTTTTATGCTGATCAGCGTGAAAATCGTCATTTTATCTCAACAATTTCTGAGGGTCAAAAAGTTCTTGACCTCTGCTGCTACAGTGGTGGGTTTTCTCTTAATGCAGCACGTGGTGGAGCTATTAATGTCACCGGTATTGATTCATCACTGCCTGCTCTGGAGCTAGCAAAAGAAAATGTAATCCTTAATAGTATGGATCCTGACAGAATATCATTTTTGAAAGCTGATGCCACGACATTCATGAAGGATGCTCTATCTAGGAATGAATCTTGGGATATAGTCATTTTGGATCCTCCCAAACTAGCTCCACGAAAAAAGGTTCTACAAACTGCATCAGGCATGTACAGGACTTTGAATTCCTTAGCAATGCAACTCACAAAGAAAGGTGGTCTTCTCATGACTTGTTCATGCTCTGGAGCAATGACTCAGAGTGGGATGTTCCTGCAAACACTCCAGGCAAGTCCAGGTGCAGCATCAATGGCCAAAAAGAAAATCACGGTCCTACGACAAGCAGGAGCAGCATGTGATCACCCCATTGACCCTACTTACCCAGAGGGTGCATATCTTTCTAATATCCTTCTACGTGTGCTCTAA 1329 44.17 MQQLQARLLKSLSVSSSPAASTIQEIASARPKGLSKVVLKKGKTQLFKDGSPMVYSGAVDRIIGRPPPKTGDVVLVADGAEKPIGWGLYNSVSMFSVRLMQLEEEAARDPSCTLDMQKLIETRIHTARELRKSLGLPSASTNAYRLVNSEGDRLSGLIIDVFGDLAVVASSAAWVEKYKAEIEDCVRGIDEINHVKWRPSVEILKEEGIDVSELKDTNPSIYPERTKVTENGIFYAISLEGQKTGFYADQRENRHFISTISEGQKVLDLCCYSGGFSLNAARGGAINVTGIDSSLPALELAKENVILNSMDPDRISFLKADATTFMKDALSRNESWDIVILDPPKLAPRKKVLQTASGMYRTLNSLAMQLTKKGGLLMTCSCSGAMTQSGMFLQTLQASPGAASMAKKKITVLRQAGAACDHPIDPTYPEGAYLSNILLRVL 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7245926 7250278 - Cp4.1LG16g07070.1 Cpe16g00706 483081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00706 442 PANTHER RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE 19 442 - -
Cpe16g00706 442 Pfam S-adenosylmethionine-dependent methyltransferase 224 395 IPR019614 GO:0008168
Cpe16g00706 442 SMART pua_5 35 115 IPR002478 GO:0003723
Cpe16g00706 442 CDD AdoMet_MTases 265 380 - -
Cpe16g00706 442 CDD RlmI_M_like 119 213 - -
Cpe16g00706 442 SUPERFAMILY PUA domain-like 35 104 IPR015947 -
Cpe16g00706 442 Pfam PUA-like domain 37 100 IPR041532 -
Cpe16g00706 442 Gene3D Vaccinia Virus protein VP39 226 442 IPR029063 -
Cpe16g00706 442 Gene3D PUA domain 34 105 IPR036974 GO:0003723
Cpe16g00706 442 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 122 437 IPR029063 -
Cpe16g00706 442 ProSiteProfiles PUA domain profile. 34 90 - -
Cpe16g00706 442 Gene3D RNA methyltransferase domain (HRMD) like 115 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00706 - - - csv:101215914 784.637
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1166 . . . . . . . . . . . . . . . . Cpe16g00706 . . . . . . . Cla02g01830 Cam02g1939 Cec02g1966 Cco02g2005 Clacu02g1919 Cmu02g1868 Cre02g2181 . . . . . . . Cme11g01637 . . . . . . . . . . . . . . . . . Bhi10g00931 . . . . . . . . . . . . . . Csa06g01148 Chy11g01044 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010611 1 3 1 0 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00706 Cpe_Chr16 FPKM 0.0 0.0 0.245781 0.0 1.023106 1.782458 0.888816 0.0 0.0 0.113753