Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00706 ATGCAGCAGCTTCAAGCCCGCCTGCTAAAGTCTCTTTCCGTTTCTTCTTCACCGGCCGCCTCAACAATCCAAGAAATCGCTTCCGCTCGCCCCAAAGGTTTATCCAAGGTTGTGCTGAAAAAGGGGAAGACACAGCTCTTTAAAGATGGGAGTCCGATGGTGTACAGTGGAGCTGTTGATAGAATAATTGGAAGGCCACCGCCAAAAACTGGAGATGTTGTCCTGGTAGCCGATGGGGCTGAGAAACCTATAGGGTGGGGTTTGTATAACTCAGTTTCCATGTTCTCTGTCAGATTGATGCAGCTGGAAGAGGAGGCAGCTAGAGATCCTTCGTGCACATTAGATATGCAGAAACTGATTGAAACTAGGATACATACTGCTAGAGAATTAAGAAAGAGCTTGGGACTTCCGTCGGCCAGTACGAATGCATACCGTCTCGTTAATAGTGAAGGAGATAGATTGTCAGGACTAATCATTGACGTCTTTGGAGATTTAGCAGTTGTGGCATCATCGGCTGCTTGGGTGGAGAAGTACAAAGCTGAAATCGAGGACTGTGTTCGTGGAATTGATGAAATCAATCATGTGAAATGGAGACCATCAGTGGAAATTCTGAAAGAAGAAGGGATAGATGTGTCTGAATTGAAGGATACAAATCCGTCTATTTATCCTGAAAGAACAAAGGTAACGGAGAATGGAATTTTCTATGCCATTTCACTTGAAGGCCAGAAAACAGGGTTTTATGCTGATCAGCGTGAAAATCGTCATTTTATCTCAACAATTTCTGAGGGTCAAAAAGTTCTTGACCTCTGCTGCTACAGTGGTGGGTTTTCTCTTAATGCAGCACGTGGTGGAGCTATTAATGTCACCGGTATTGATTCATCACTGCCTGCTCTGGAGCTAGCAAAAGAAAATGTAATCCTTAATAGTATGGATCCTGACAGAATATCATTTTTGAAAGCTGATGCCACGACATTCATGAAGGATGCTCTATCTAGGAATGAATCTTGGGATATAGTCATTTTGGATCCTCCCAAACTAGCTCCACGAAAAAAGGTTCTACAAACTGCATCAGGCATGTACAGGACTTTGAATTCCTTAGCAATGCAACTCACAAAGAAAGGTGGTCTTCTCATGACTTGTTCATGCTCTGGAGCAATGACTCAGAGTGGGATGTTCCTGCAAACACTCCAGGCAAGTCCAGGTGCAGCATCAATGGCCAAAAAGAAAATCACGGTCCTACGACAAGCAGGAGCAGCATGTGATCACCCCATTGACCCTACTTACCCAGAGGGTGCATATCTTTCTAATATCCTTCTACGTGTGCTCTAA 1329 44.17 MQQLQARLLKSLSVSSSPAASTIQEIASARPKGLSKVVLKKGKTQLFKDGSPMVYSGAVDRIIGRPPPKTGDVVLVADGAEKPIGWGLYNSVSMFSVRLMQLEEEAARDPSCTLDMQKLIETRIHTARELRKSLGLPSASTNAYRLVNSEGDRLSGLIIDVFGDLAVVASSAAWVEKYKAEIEDCVRGIDEINHVKWRPSVEILKEEGIDVSELKDTNPSIYPERTKVTENGIFYAISLEGQKTGFYADQRENRHFISTISEGQKVLDLCCYSGGFSLNAARGGAINVTGIDSSLPALELAKENVILNSMDPDRISFLKADATTFMKDALSRNESWDIVILDPPKLAPRKKVLQTASGMYRTLNSLAMQLTKKGGLLMTCSCSGAMTQSGMFLQTLQASPGAASMAKKKITVLRQAGAACDHPIDPTYPEGAYLSNILLRVL 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7245926 7250278 - Cp4.1LG16g07070.1 Cpe16g00706 483081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00706 442 PANTHER RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE 19 442 - -
Cpe16g00706 442 Pfam S-adenosylmethionine-dependent methyltransferase 224 395 IPR019614 GO:0008168
Cpe16g00706 442 SMART pua_5 35 115 IPR002478 GO:0003723
Cpe16g00706 442 CDD AdoMet_MTases 265 380 - -
Cpe16g00706 442 CDD RlmI_M_like 119 213 - -
Cpe16g00706 442 SUPERFAMILY PUA domain-like 35 104 IPR015947 -
Cpe16g00706 442 Pfam PUA-like domain 37 100 IPR041532 -
Cpe16g00706 442 Gene3D Vaccinia Virus protein VP39 226 442 IPR029063 -
Cpe16g00706 442 Gene3D PUA domain 34 105 IPR036974 GO:0003723
Cpe16g00706 442 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 122 437 IPR029063 -
Cpe16g00706 442 ProSiteProfiles PUA domain profile. 34 90 - -
Cpe16g00706 442 Gene3D RNA methyltransferase domain (HRMD) like 115 219 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00706 - - csv:101215914 784.637