Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00708 ATGGCAGATAATCCCAGAACAGATTCATTCAGAACAGAACTTTTGTCCCCTGAGGGTGTGGCTGCTGGAAGAGATGGAATGGTGTCAAAGGTGCCCTCGTGGCGACTTAATATGGACGAGTTCCATTTGCCTGCAACCAACAAGAGATCTCATCATGGCATTGTTTATTACTGGAAGTCATGGAAGAGACAAAGAAATGTTGCTAAGTACTATGAAAGGCAAGAAAGTCTTCTCAAAGGATTCAATGAAGTTGACTCCTACAATGAACTGGGTGTCGTGCCGGGAACCTTAACTGAGGAAGAAAAGAAGCAAGAGGCCAACGGTGAGAGAATGGCAATATATGCATCCAACATAGCCAACATGTTGATCTTCATCGCAAAAGTGTATGCTTCAGTTGAGAGCAGATCACTAGCAGTTATAGCATCAACACTAGATTCCCTGTTGGATCTTTTATCAGGGTTCATATTATGGTTTACAGCTAATGCTATGAGAAAGCCAAATCAGTATCGTTATCCTATTGGCAAGAATCGGATGCAACCAGGAATTGTCGTGTTTGCATCAATCATGGCAACTCTTGGAATACAAATTTTGCTTGAATCAGCTCGAGAACTTATTTCAAAGGTTCAACCAGATAGAGATCCAGATAAAGTAAAATGGATGGTTGGAATAATGGCATCCGTAACAGTAGTGAAAATTTGCCTTACAATCTACTGCCGCAAATTCGCAAATGAAATCATCAGAGCCTATGCCCAAGACCATTTCTTTGATGTAATTACCAATTCAATTGGTCTTGCGACTGCCCTTTTGGCCATCAAATTCTACTGGTGGCTTGATCCCCTTGGGGCTATCCTAATAGCATTGTACACTATCAGCAACTGGGCGAAAACTGTGATGGAAAATGTATGGTCGCTAATAGGGAGGACAGCCCCACCAGACTACTTGGCCAAGCTAACATATCTAGTATGGAATCATCACGAGGAAATCAAACATATTGATACAGTGAGAGCGTATACCTTTGGGTGCAACTATTTTGTGGAGGTGGACATAGTGTTGCCTGGTGAAACGTCTCTAAGTCAAGCACATGACATAGGAGAATCACTTCAAGATAAACTTGAACAGCTTGATGAGGTTGATCGTGCATTTGTTCATGTGGACTTTGAGTTCACTCATAAGCCAGAGCACAAGCCTAAAGCTTCATAG 1200 42.08 MADNPRTDSFRTELLSPEGVAAGRDGMVSKVPSWRLNMDEFHLPATNKRSHHGIVYYWKSWKRQRNVAKYYERQESLLKGFNEVDSYNELGVVPGTLTEEEKKQEANGERMAIYASNIANMLIFIAKVYASVESRSLAVIASTLDSLLDLLSGFILWFTANAMRKPNQYRYPIGKNRMQPGIVVFASIMATLGIQILLESARELISKVQPDRDPDKVKWMVGIMASVTVVKICLTIYCRKFANEIIRAYAQDHFFDVITNSIGLATALLAIKFYWWLDPLGAILIALYTISNWAKTVMENVWSLIGRTAPPDYLAKLTYLVWNHHEEIKHIDTVRAYTFGCNYFVEVDIVLPGETSLSQAHDIGESLQDKLEQLDEVDRAFVHVDFEFTHKPEHKPKAS 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7252016 7254612 - Cp4.1LG16g07110.1 Cpe16g00708 483083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00708 399 Pfam Dimerisation domain of Zinc Transporter 313 385 IPR027470 -
Cpe16g00708 399 Pfam Cation efflux family 114 304 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cpe16g00708 399 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 2 398 - -
Cpe16g00708 399 PANTHER CATION DIFFUSION FACILITATOR FAMILY TRANSPORTER 2 398 - -
Cpe16g00708 399 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 309 385 IPR036837 -
Cpe16g00708 399 Gene3D Cation efflux protein, cytoplasmic domain 311 386 IPR036837 -
Cpe16g00708 399 TIGRFAM CDF: cation diffusion facilitator family transporter 112 385 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cpe16g00708 399 SUPERFAMILY Cation efflux protein transmembrane domain-like 107 306 IPR027469 -
Cpe16g00708 399 Gene3D Cation efflux protein transmembrane domain 110 304 IPR027469 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00708 - - - csv:101216157 749.969
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01032 Cpe16g00708 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00203 Cpe-Chr1:1145431 Cpe16g00708 Cpe-Chr16:7252016 1.27E-149 dispersed
Cpe01g01111 Cpe-Chr1:6569622 Cpe16g00708 Cpe-Chr16:7252016 9.17E-150 dispersed
Cpe16g00708 Cpe-Chr16:7252016 Cpe18g00137 Cpe-Chr18:2918424 6.02E-110 dispersed
Cpe16g00708 Cpe-Chr16:7252016 Cpe05g01032 Cpe-Chr5:6770540 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1151 Blo04g00461 . . . . . . . . . . . . . . . Cpe16g00708 . . . . . . . Cla02g01828 Cam02g1937 Cec02g1964 Cco02g2003 Clacu02g1917 Cmu02g1866 Cre02g2179 . . . . . . . Cme11g01635 . . . . Bpe15g00920 . Bma03g00494 . . . . . . . . . Cpe05g01032 Bhi10g00937 . . . . . . . . . . . . . . Csa06g01150 Chy11g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005363 3 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00708 Cpe_Chr16 FPKM 30.154139 30.082554 61.876194 62.317299 83.545998 83.37854 79.185013 174.238205 175.985718 168.922302