Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00709 ATGGCCTTCTCATCCTCCTTCGCTGGATCTGCTGTTTCCTCTTCTCTGATCCAAGCGTCTCGTTCTGACTTCTCGCCGTCCGATTGCCGGAAGGCTTCATGCGTCGGGCGCTCTTTGAAGCTTCAATCTGCCATTGTCGGAACTACTATCTCGAGTGGGGCGTCTTCTTTACAGTTAAGGACATCTAAAAATCGCACCGTTCAACCCATCAAAGCTACGGCCACTGAGGCACCTCCGACGATCCAAAGTTTTGGTCGAATTGGAAGACTGGTATTACGAATTGCAACCTCCAGAGATGATGTTGATGTTGTAGCAGTTAATGATCCATTTGTTGACGCTAAGTACATGGCTTACATGCTCAAATACGATTCTACTCATGGTATTTTCAATGGAACCATCAAGGTTCTCAGTGATTCAACCTTGGAAGTTAATGGGAAGCAGATCAAAGTTGCAAGCAAAAGGAACCCTGCAGAGATTCCTTGGGGTGATTATGGGGCTGAATATGTTGTAGAGTCCTCAGGAGTTTTCACTACAAAAGAGAAGGCTTCAGCACACTTGAAGGTTGTTCATGAGGAATTTGGCATTGTTGAAGGTCTAATGACAACAGTGCATGCAACCACAGCAACACAAAAGACTGTCGATGGCCCTTCAATGAAGGATTGGAGAGGTGGCCGCGGTGCTGCACAAAATATAATTCCTAGCTCTACTGGTGCTGCCAAGGCTGTTGGTAAAGTTCTTCCGGAGCTAAATGGAAAGCTCACTGGAATGGCTTTCCGTGTCCCAGCACCCAATGTATCTGTTGTGGACTTAACCTGCCGACTTGAAAAAAGTGCTTCATATGAAGATGTAAAGGCAGCAGTAAAGTATGCATCCGAAGGTCCATTGAAAGGCATTCTTGGGTATACCGATGAGGATGTTGTCTCTACTGATTTTCTTGGTGACTCCAGATCAAGTATATTTGATGGAAAGGCTGGAATAGGCCTCAGTGCCTCATTCGTGAAGCTGGTGACTTGGTATGACAATGAATGGGGATACAGCACCCGAGTTCTGGACCTTATCGAGCACATGGCATTGGTTTCAGCCTAA 1086 46.13 MAFSSSFAGSAVSSSLIQASRSDFSPSDCRKASCVGRSLKLQSAIVGTTISSGASSLQLRTSKNRTVQPIKATATEAPPTIQSFGRIGRLVLRIATSRDDVDVVAVNDPFVDAKYMAYMLKYDSTHGIFNGTIKVLSDSTLEVNGKQIKVASKRNPAEIPWGDYGAEYVVESSGVFTTKEKASAHLKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPAPNVSVVDLTCRLEKSASYEDVKAAVKYASEGPLKGILGYTDEDVVSTDFLGDSRSSIFDGKAGIGLSASFVKLVTWYDNEWGYSTRVLDLIEHMALVSA 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7255572 7259737 - Cp4.1LG16g07140.1 Cpe16g00709 483084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00709 361 SMART gp_dh_n_7 84 197 IPR020828 GO:0051287
Cpe16g00709 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 81 206 IPR036291 -
Cpe16g00709 361 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 185 339 - -
Cpe16g00709 361 Gene3D Dihydrodipicolinate Reductase; domain 2 177 341 - -
Cpe16g00709 361 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 187 360 IPR020831 GO:0016620
Cpe16g00709 361 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 25 187 IPR020831 GO:0016620
Cpe16g00709 361 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE-RELATED 187 360 - -
Cpe16g00709 361 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE-RELATED 25 187 - -
Cpe16g00709 361 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 81 179 IPR020828 GO:0051287
Cpe16g00709 361 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 295 310 IPR020831 GO:0016620
Cpe16g00709 361 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 198 214 IPR020831 GO:0016620
Cpe16g00709 361 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 255 272 IPR020831 GO:0016620
Cpe16g00709 361 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 186 339 IPR020829 GO:0016620
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00709 K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] - csv:101203472 615.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe15g00903 Cpe16g00709 CCT
Cpe05g01033 Cpe16g00709 CCT
Cpe04g00865 Cpe16g00709 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00709 Cpe-Chr16:7255572 Cpe20g00323 Cpe-Chr20:1817586 9.26E-125 dispersed
Cpe15g00903 Cpe-Chr15:8679143 Cpe16g00709 Cpe-Chr16:7255572 0 wgd
Cpe16g00709 Cpe-Chr16:7255572 Cpe04g00865 Cpe-Chr4:7943557 0 wgd
Cpe16g00709 Cpe-Chr16:7255572 Cpe05g01033 Cpe-Chr5:6773286 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1147 Blo04g00463 Blo13g00601 . . . . . . . . . . . . Sed05g1836 Cpe04g00865 Cpe16g00709 Bhi05g01995 Tan02g0029 . Lac12g0041 Hepe02g0014 . . . . . . . . . . . . . . Csa07g01207 . Cme11g01634 . . . . Bpe15g00918 . . . Sed05g3308 . . . . . . Cpe15g00903 Cpe05g01033 Bhi10g00938 Tan05g0584 Cmetu11g0258 . Hepe08g0647 . . . . . . . . . . Csa06g01151 Chy11g01041 Cme01g01504
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002415 1 2 2 0 2 2 3 1 2 2 1 1 3 2 2 3 2 1 4 1 2 1 2 2 2 1 2 4 7 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00709 Cpe_Chr16 FPKM 0.571272 0.61707 0.0 0.0 1.29054 1.332016 0.93508 0.0 0.0 0.0