Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00715 ATGGCCGCCGAAGTAAGCTCGCTCGTGCGAGTTCTTACAAGCTACAACAAAGCGGCGGCCGGAAACGATTCCGGCACCGAGAAATTAACGACTTTGATCACCCGAGACTTACTCAGCGGCGGCGAGTCTCAAGAATTGGACCTCGACCTCCATGTTCCTTCCGGCTGGGAAAAAAGGCTGGACTTGAAGTCCGGAAAAATGTTCATTCAAAGATGCAATGTTCAAGATTTCAACAACAATCATCAAACGAATCAAACAGTACCAAAGCTTCAAGATTTGAACTTTCCACCGTCGCCGCCCAATTACCCAAAATTCCATTTCTCAACCCATTTAATGGACGAAACCAATTTGGATTTGAAATTAGTTTCATCGCCGTCGCAGTCGCCGTCGCAGAGGACTAATTATCAGAGCGTTTGTACCTTAGACAAGGTCAAATCGGCGTTAGAACGAGCCGAGAGAAATCCCATCAGAAAACGGTCGTCACTCTGGAAATCATCGCCGTCGGTGTCGCCGTCGCCGTCTTATTCCTCCTCATCGTCGTCAGCAGCTGGAAAGGAGTTTCAAGAAGAACCCAACTTGAAACATTTGTCGTCAACGCCGATTGTCGCCGGCTGCCCTGGTTGTTTGTCCTACGTGTTGGTGATGAAGAACAATCCGACATGCCCGCGGTGTAGCTCCGTCGTACCGTTGCCGGCGGCGAAGAAACCTCGTATTGATCTGAACATTTCAATTTGA 735 48.98 MAAEVSSLVRVLTSYNKAAAGNDSGTEKLTTLITRDLLSGGESQELDLDLHVPSGWEKRLDLKSGKMFIQRCNVQDFNNNHQTNQTVPKLQDLNFPPSPPNYPKFHFSTHLMDETNLDLKLVSSPSQSPSQRTNYQSVCTLDKVKSALERAERNPIRKRSSLWKSSPSVSPSPSYSSSSSSAAGKEFQEEPNLKHLSSTPIVAGCPGCLSYVLVMKNNPTCPRCSSVVPLPAAKKPRIDLNISI 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7288796 7290166 + Cp4.1LG16g07020.1 Cpe16g00715 483090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00715 244 PANTHER FILAMENTOUS HEMAGGLUTININ TRANSPORTER 1 243 - -
Cpe16g00715 244 PANTHER PUTATIVE-RELATED 1 243 - -
Cpe16g00715 244 MobiDBLite consensus disorder prediction 151 191 - -
Cpe16g00715 244 MobiDBLite consensus disorder prediction 160 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00715 - - - csv:101202760 341.658
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe15g00895 Cpe16g00715 CCT
Cpe04g00860 Cpe16g00715 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00860 Cpe-Chr4:7918265 Cpe16g00715 Cpe-Chr16:7288796 5.90E-75 dispersed
Cpe05g01568 Cpe-Chr5:10784277 Cpe16g00715 Cpe-Chr16:7288796 4.88E-61 dispersed
Cpe15g00895 Cpe-Chr15:8613048 Cpe16g00715 Cpe-Chr16:7288796 1.46E-76 dispersed
Cpe16g00715 Cpe-Chr16:7288796 Cpe19g00491 Cpe-Chr19:4237432 1.06E-06 dispersed
Cpe16g00714 Cpe-Chr16:7287369 Cpe16g00715 Cpe-Chr16:7288796 1.38E-38 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1110 Blo04g00471 . . . Bpe07g00466 . . . . . . . . . Sed05g1845 Cpe04g00860 Cpe16g00715 Bhi05g02012 Tan02g0054 Cmetu01g1126 Lac12g0051 Hepe02g0023 . . Cla02g01820 Cam02g1928 Cec02g1953 Cco02g1994 Clacu02g1908 Cmu02g1856 Cre02g2171 . . . . . Csa07g01196 . Cme11g01622 Blo15g00619 . . . Bpe15g00910 . Bma03g00504 . Sed01g0757 . . . . . . Cpe15g00895 . Bhi10g00954 Tan05g0599 Cmetu11g0762 . Hepe08g0636 . . . . . . . . . . Csa06g01161 Chy11g01030 Cme01g01520
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001739 2 2 2 1 3 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00715 Cpe_Chr16 FPKM 15.74955 17.628611 15.283147 15.473582 15.309036 14.729837 15.490866 17.480278 19.152773 18.692877