Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe16g00716 | ATGTCTGCGGCTACTGCACCGTTGAACAAAATTGAGCGAGCCCACCAGATGTACCGTGAGGGGCTCTATGTCGATGCCCTTAGATTTTACACTGAAGCGCTTGCCATGGCCAAGACCAAGTCCCAGAGGATTGCGCTGCATAGTAACAGAGCTGCTTGTCACTTGAAACTTCATGATTTTAAGAAGGCAGCAGAAGAATGTACGTGGGTTCTTGAACTTGATCATAAGCACACTGGAGCGCTAATGCTCCGTGCCCAGACTCTTGTCACACTCAAGGAATACCATTCTGCTCTGTTTGATGTCAACAGACTTATAGAACTGAACCCATCATCAGAAGTTTATCAAAATCTTCAAACTCGTCTCAAGACGCAATTGTCACTTGCTCCAATACCTGAATCAGAAGCAGAGCTTGAAGAAGAGGAGGAAGAAGAATATGATGTTGAGTTCAATGACTATGCAGCCGATGAGAAGTGCAATGAGGGAAAAGGAAATGTTATAGCTCCAAGTATTGTTCAGTTACAGAAACCTGAGCACGATTGCAATTTGATAAAAACTACCCTTATCCAGACAACTCGGGGCGACAGTGGATTATCTGATGAAAAAAGGAGCAATCAGAAAGCTGAGGTGAAAAACACCACAAAAAGTGAAGTTGTTGTCCTTCAAGCTCAGAGCAAGAAGGGCACGACCGACGTAGGTCCCAATGGCTGGCAAACGATCCCAAAACCAAAAGGACACTCGACTTTAGACTATGCACGTTGGGATAGAGTTGAGGATGATTCCAGTGAAGACGACGACGATGATGAAGAGGAGTCGGGACCTCAATTTCGTTTTCGTGTCAGAACCGTTGGCGTTAAACCTGTGAAATGA | 867 | 45.1 | MSAATAPLNKIERAHQMYREGLYVDALRFYTEALAMAKTKSQRIALHSNRAACHLKLHDFKKAAEECTWVLELDHKHTGALMLRAQTLVTLKEYHSALFDVNRLIELNPSSEVYQNLQTRLKTQLSLAPIPESEAELEEEEEEEYDVEFNDYAADEKCNEGKGNVIAPSIVQLQKPEHDCNLIKTTLIQTTRGDSGLSDEKRSNQKAEVKNTTKSEVVVLQAQSKKGTTDVGPNGWQTIPKPKGHSTLDYARWDRVEDDSSEDDDDDEEESGPQFRFRVRTVGVKPVK | 288 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 7299872 | 7302836 | + | Cp4.1LG16g07170.1 | Cpe16g00716 | 483091 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe16g00716 | 288 | Gene3D | Tetratricopeptide repeat domain | 5 | 127 | IPR011990 | GO:0005515 | |
| Cpe16g00716 | 288 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN | 4 | 288 | - | - | |
| Cpe16g00716 | 288 | MobiDBLite | consensus disorder prediction | 210 | 235 | - | - | |
| Cpe16g00716 | 288 | MobiDBLite | consensus disorder prediction | 192 | 288 | - | - | |
| Cpe16g00716 | 288 | SMART | tpr_5 | 44 | 77 | IPR019734 | GO:0005515 | |
| Cpe16g00716 | 288 | SMART | tpr_5 | 78 | 111 | IPR019734 | GO:0005515 | |
| Cpe16g00716 | 288 | MobiDBLite | consensus disorder prediction | 195 | 209 | - | - | |
| Cpe16g00716 | 288 | SUPERFAMILY | TPR-like | 11 | 122 | IPR011990 | GO:0005515 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe05g01556 | Cpe-Chr5:10691234 | Cpe16g00716 | Cpe-Chr16:7299872 | 1.34E-144 | dispersed | |
| Cpe16g00716 | Cpe-Chr16:7299872 | Cpe02g00959 | Cpe-Chr2:8301510 | 4.67E-10 | dispersed | |
| Cpe16g00716 | Cpe-Chr16:7299872 | Cpe12g01106 | Cpe-Chr12:9151197 | 1.64E-10 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe16g00716 | - | - | csv:101219918 | 441.81 |