Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00717 ATGTTCTTTTCCGGAAGTTACTGGAAAGATTTGTCGAACTCATGGGAGGGTGGCAATCAAATGTTTCTTTGGCCATGGGTGTTGGGGTTAGACATTTGCCCTTGTATTTGTTCTTGGCTATGCAATTGTTGGGCATTTGATGAGCCCTGTTGTTTTCATCTTACTAAGCTTTACACGGGGATATACTGTCGTGATATGGATATGAATATGGAGAATTTATCATCTAGTGATCCGTCGCATCAGGCGATGTATGAAAATAGTGATTCGAAACACTCACAGGATGGGTTGGAGGATGGTTCTCAATGGTATTTTTCTAGGAGGGAATTAGAAGAAAATTCTCCTTCTAAACAAGATGGGATTGACTTGAAAAAGGAGGCATATCTACGCAAATCGTACTGTACATTCCTCCAAGATTTGGGAATGAGACTTAAAGTTCCCCAGGTAACCATTGCTACAGCAATAATATTTTGTCATAGGTTCTTTCTTCGGCAGTCTCATGCAAAGAATGACCGAAGGACAATTGCGACAGTGTGTATGTTTCTCGCAGGAAAGGTTGAAGAAACCCCGCGTCCATTGAAGGATGTTATTATGGTCTCATATGAAATCATCAACAAGAAGGATCCTACTGCAGCCCAGAAAATTAGACAAAAGGAGGTGTATGAACGGCAAAAAGAGTTAATTTTACTTGGGGAGAGGGTTGTTCTCGCAACTCTTGGTTTTGATCTTAACGTGCACCATCCCTACAAACCCCTCGTTGAGGCAATTAAAAAATTCAAAGTTGCTCAAAATGCCTTGGCTCAAGTAGCTTGGAATTTCGTCAATGATGGATTGCGGACATCTCTTTGCTTGCAATTTAAGCCTCACCATATTGCGGCTGGTGCCATTTTCCTTGCTGCCAAATTTCTCAAAGTTAAACTCCCATCAGATGGGGAAAAGTGCACCAGAAACTGGTTCTGCATTGAACTTCGTTTTGTTGAAGTACTCGCTGAAACATTCGCCTTCGTTCCTAGATCTCGTGTTGAGAAAAATTTACATTTTAAGCCAGGCAAAAAAGTCAGCAACCAAATGTTAGAGCTTTATGAACAGAATCGATTGCCTTCTGGTGAAGCTGATGGAAGCATTGGAGGTGGTCCTTCCAATCAAACCTCAATAAAAGCTCCCTCGAACAGCGAAGAACGTGCTGTAGCGGACAATCATGCACTTGGTGCGGGTCTTGCTACTTCAAGACTTGGAACCTCAAAAGCTAGTTCATCTAGGCCAGCTTCTGAACACTCATTTGCAGGTGACCAGCCATCGAGAGCAATGCGGAATCATAGTATCGAAAGTTCGAATGTAGATTTTAGAAACCCTTCCAATCACAATACAGGTAGTGAATCTAAGGTTAGACAGGAGATGGAGACATCGGCTTTCCATGACAAGGGAAATGCTCAAAACTCGCTAAGGCATCAGTCTGAGGGATTGGTTGGGCAAGACCATGGAAATGATATGAAATCAAAGGAAACAACAAGGGATTCAATGGAACTGAAAGACAAACATGTAATTCGAAATACAGATCTTAGAGAAGGTACACTCGGTAAATCTCAGGACGCTATCAAAAAGATCGACAAGGACAAAGTAAAGGCTGCACTCGAAAAACGAAGGAAGTCTCTCGGCAGCATGACCCAGAAAAAAGAATTAATGGATGAAGATGATCTGATTGAAAGGGAGTTGGAAGCTGGTGTTGAGATGGCTGCTGGGAGTGAGAAAAACAAGCGAGAACAGAGGCAAAGTTGGAATTCTAGCAAAATGGAAGAAGGGGAGTTCACAAATGCTCACCATGCTGGCTATGAACATCAAGATTCCCCAAAGTTGAACAGTTCCCTTAATTTTCCTCTTCGAACCGTCATAGCTTCGTTTCGGAATTCTTTTCGTCTCATTTCTGCTGTTGAATCCTCAACCTCCGCTTCTCTGTCTGTAATTCATAGAGAGAGATCGAGTATGTCGCAGAGCAATGGGCCTGATTTCAACCTACCTGATGAGATTTTGGCGGTGATTCCAACGGATCCATACGATCAGCTCGATCTTGCGCGAAAAATCACCTCCATGGCGATTGCCTCTCGTGTGTCGAATCTTGAAGCAGACATGGTAAGGATGAAGCAAAAGCTTAACGAGAAGGAAATAACCATCTACGACCTGCAGAAGAAGTTGTCTCACCTGGAGCACGCGAACCAGGAAGCTGAATCTAGGTTGAAGATCGCGCTTGATGATAATACGAGGCTTTCCATGGAAAGGGATGCACTATCAATGACTTCAAAGAAACTTGGACGTGATTTGGCAAAGGAGGTGTATGAACGGCAAAAAGAGTTAATTTTACTTGGGGAGAGGGTTGTTCTCGCAACTCTTGGTTTTGATCTTAACGTGCACCATCCCTACAAACCCCTCGTTGAGGCAATTAAAAAATTCAAAGTTGCTCAAAATGCCTTGGCTCAAGTAGCTTGGAATTTCGTCAATGATGGATTGCGGACATCTCTTTGCTTGCAATTTAAGCCTCACCATATTGCGGCTGGTGCCATTTTCCTTGCTGCCAAATTTCTCAAAGTTAAACTCCCATCAGATGGGGAAAAGGTGTGGTGGCAAGAGTTTGATGTCACCCCACGGCAATTGGAGGTACTCGCTGAAACATTCGCCTTCGTTCCTAGATCTCGTGTTGAGAAAAATTTACATTTTAAGCCAGGCAAAAAAGTCAGCAACCAAATGTTAGAGCTTTATGAACAGAATCGATTGCCTTCTGGTGAAGCTGATGGAAGCATTGGAGGTGGTCCTTCCAATCAAACCTCAATAAAAGCTCCCTCGAACAGCGAAGAACGTGCTGTAGCGGACAATCATGCACTTGGTGCGGGTCTTGCTACTTCAAGACTTGGAACCTCAAAAGCTAGTTCATCTAGGCCAGCTTCTGAACACTCATTTGCAGGTGACCAGCCATCGAGAGCAATGCGGAATCATAGTATCGAAAGTTCGAATGTAGATTTTAGAAACCCTTCCAATCACAATACAGGTAGTGAATCTAAGGTTAGACAGGAGATGGAGACATCGGCTTTCCATGACAAGGGAAATGCTCAAAACTCGCTAAGGCATCAGTCTGAGGGATTGGTTGGGCAAGACCATGGAAATGATATGAAATCAAAGGAAACAACAAGGGATTCAATGGAACTGAAAGACAAACATGTAATTCGAAATACAGATCTTAGAGAAGGTACACTCGGTAAATCTCAGGACGCTATCAAAAAGATCGACAAGGACAAAGTAAAGGCTGCACTCGAAAAACGAAGGAAGTCTCTCGGCAGCATGACCCAGAAAAAAGAATTAATGGATGAAGATGATCTGATTGAAAGGGAGTTGGAAGCTGGTGTTGAGATGGCTGCTGGGAGTGAGAAAAACAAGCGAGAACAGAGGCAAAGTTGGAATTCTAGCAAAATGGAAGAAGGGGAGTTCACAAATGCTCACCATGCTGGCTATGAACATCAAGATTCCCCAAAGTTGAACAGTTCCCTTAATTTTCCTCTTCGAACCGTCATAGCTTCGTTTCGGAATTCTTTTCGTCTCATTTCTGCTGTTGAATCCTCAACCTCCGCTTCTCTGTCTGTAATTCATAGAGAGAGATCGAGTATGTCGCAGAGCAATGGGCCTGATTTCAACCTACCTGATGAGATTTTGGCGGTGATTCCAACGGATCCATACGATCAGCTCGATCTTGCGCGAAAAATCACCTCCATGGCGATTGCCTCTCGTGTGTCGAATCTTGAAGCAGACATGGTAAGGATGAAGCAAAAGCTTAACGAGAAGGAAATAACCATCTACGACCTGCAGAAGAAGTTGTCTCACCTGGAGCACGCGAACCAGGAAGCTGAATCTAGGTTGAAGATCGCGCTTGATGATAATACGAGGCTTTCCATGGAAAGGGATGCACTATCAATGACTTCAAAGAAACTTGGACGTGATTTGGCAAAGCTGGAGACGTTTAAGCGACAACTTATGCTATCATTGAATGATGAATCCTCTCAAACAGAAACTGTTGATATTGGGACCTGTGATCAAGCAGTTCCTAAAGCATATACTGACAAGGATGAGGTAACTGATGGACACGCCACGCGTTCTTTCGGTGGTTCTACGGAGACGAGAAACACAATAGATGAAGGAAAACATCTTGGACAAAGATTTTCATCGCTGCATATCACCCCAAGGTTCACTCCATCTGCGACTCCAAAAACTATTTCAAAGAGTGTATCCCCCAGAGGGTATTCCTCCGTTGCTTCGCCACAGATAACATCTGGTTCAACTTCTCCAACAAAACTCTCATATGATGGACGAATCGCACTATCTCCGTGGTACCCGTCAAGCCAGCAGTCTTCAGCAGCAAGTTCTCCTCCTCGTTCTCGTCCATTGGCCGGTCGCGCTGCTCGAGTTGATGGCAAGGAATTTTTCCGCCTTGCCAGGAGTCGTCTGTCATACGAGCAGTTTAGTGCCTTCCTTTCAAACATAAAAGAACTCAATTCTCAAAAGCAGACTAGAGAGGAAACTTTAAGAAAAGCAGAAGAGATATTTGGGACAGATAACAAAGATCTTTTTCTGTCATTTCAAGGATTGCTTAACCGCAATATTCACTAG 4644 43.6 MFFSGSYWKDLSNSWEGGNQMFLWPWVLGLDICPCICSWLCNCWAFDEPCCFHLTKLYTGIYCRDMDMNMENLSSSDPSHQAMYENSDSKHSQDGLEDGSQWYFSRRELEENSPSKQDGIDLKKEAYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIMVSYEIINKKDPTAAQKIRQKEVYERQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKCTRNWFCIELRFVEVLAETFAFVPRSRVEKNLHFKPGKKVSNQMLELYEQNRLPSGEADGSIGGGPSNQTSIKAPSNSEERAVADNHALGAGLATSRLGTSKASSSRPASEHSFAGDQPSRAMRNHSIESSNVDFRNPSNHNTGSESKVRQEMETSAFHDKGNAQNSLRHQSEGLVGQDHGNDMKSKETTRDSMELKDKHVIRNTDLREGTLGKSQDAIKKIDKDKVKAALEKRRKSLGSMTQKKELMDEDDLIERELEAGVEMAAGSEKNKREQRQSWNSSKMEEGEFTNAHHAGYEHQDSPKLNSSLNFPLRTVIASFRNSFRLISAVESSTSASLSVIHRERSSMSQSNGPDFNLPDEILAVIPTDPYDQLDLARKITSMAIASRVSNLEADMVRMKQKLNEKEITIYDLQKKLSHLEHANQEAESRLKIALDDNTRLSMERDALSMTSKKLGRDLAKEVYERQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEVLAETFAFVPRSRVEKNLHFKPGKKVSNQMLELYEQNRLPSGEADGSIGGGPSNQTSIKAPSNSEERAVADNHALGAGLATSRLGTSKASSSRPASEHSFAGDQPSRAMRNHSIESSNVDFRNPSNHNTGSESKVRQEMETSAFHDKGNAQNSLRHQSEGLVGQDHGNDMKSKETTRDSMELKDKHVIRNTDLREGTLGKSQDAIKKIDKDKVKAALEKRRKSLGSMTQKKELMDEDDLIERELEAGVEMAAGSEKNKREQRQSWNSSKMEEGEFTNAHHAGYEHQDSPKLNSSLNFPLRTVIASFRNSFRLISAVESSTSASLSVIHRERSSMSQSNGPDFNLPDEILAVIPTDPYDQLDLARKITSMAIASRVSNLEADMVRMKQKLNEKEITIYDLQKKLSHLEHANQEAESRLKIALDDNTRLSMERDALSMTSKKLGRDLAKLETFKRQLMLSLNDESSQTETVDIGTCDQAVPKAYTDKDEVTDGHATRSFGGSTETRNTIDEGKHLGQRFSSLHITPRFTPSATPKTISKSVSPRGYSSVASPQITSGSTSPTKLSYDGRIALSPWYPSSQQSSAASSPPRSRPLAGRAARVDGKEFFRLARSRLSYEQFSAFLSNIKELNSQKQTREETLRKAEEIFGTDNKDLFLSFQGLLNRNIH 1547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7303726 7318010 + Cp4.1LG16g07240.1 Cpe16g00717 483092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 965 981 - -
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 74 89 - -
Cpe16g00717 1547 PANTHER CYCLIN 907 1170 IPR043198 GO:0006357|GO:0016538
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 1133 1153 - -
Cpe16g00717 1547 CDD CYCLIN 243 304 IPR013763 -
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 409 425 - -
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 1365 1443 - -
Cpe16g00717 1547 CDD CYCLIN 799 860 IPR013763 -
Cpe16g00717 1547 PANTHER - 907 1170 - -
Cpe16g00717 1547 PANTHER - 772 884 - -
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 991 1019 - -
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 1457 1478 - -
Cpe16g00717 1547 CDD CYCLIN 128 199 IPR013763 -
Cpe16g00717 1547 SUPERFAMILY Cyclin-like 99 244 IPR036915 -
Cpe16g00717 1547 SMART cyclin_7 134 236 IPR013763 -
Cpe16g00717 1547 SMART cyclin_7 249 330 IPR013763 -
Cpe16g00717 1547 SMART cyclin_7 805 885 IPR013763 -
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 435 463 - -
Cpe16g00717 1547 Gene3D - 244 369 - -
Cpe16g00717 1547 Gene3D - 93 242 - -
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 922 951 - -
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 965 1062 - -
Cpe16g00717 1547 Coils Coil 1257 1312 - -
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 74 96 - -
Cpe16g00717 1547 SUPERFAMILY Cyclin-like 245 319 IPR036915 -
Cpe16g00717 1547 Gene3D - 784 927 - -
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 409 506 - -
Cpe16g00717 1547 Coils Coil 701 756 - -
Cpe16g00717 1547 PANTHER CYCLIN 70 613 IPR043198 GO:0006357|GO:0016538
Cpe16g00717 1547 PANTHER CYCLIN 772 884 IPR043198 GO:0006357|GO:0016538
Cpe16g00717 1547 SUPERFAMILY Cyclin-like 801 887 IPR036915 -
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 374 389 - -
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 1048 1062 - -
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 1402 1443 - -
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 470 485 - -
Cpe16g00717 1547 Pfam Cyclin, N-terminal domain 107 243 IPR006671 -
Cpe16g00717 1547 PANTHER - 70 613 - -
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 492 506 - -
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 930 945 - -
Cpe16g00717 1547 Coils Coil 1506 1526 - -
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 1026 1041 - -
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 577 597 - -
Cpe16g00717 1547 MobiDBLite consensus disorder prediction 367 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00717 K15188 CCNT; cyclin T - csv:101220862 889.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01557 Cpe-Chr5:10694144 Cpe16g00717 Cpe-Chr16:7303726 6.62E-58 dispersed
Cpe05g01571 Cpe-Chr5:10806495 Cpe16g00717 Cpe-Chr16:7303726 4.41E-06 dispersed
Cpe08g00225 Cpe-Chr8:1503524 Cpe16g00717 Cpe-Chr16:7303726 7.36E-18 dispersed
Cpe09g00702 Cpe-Chr9:6217731 Cpe16g00717 Cpe-Chr16:7303726 7.62E-105 dispersed
Cpe12g00241 Cpe-Chr12:1620346 Cpe16g00717 Cpe-Chr16:7303726 3.89E-17 dispersed
Cpe16g00717 Cpe-Chr16:7303726 Cpe17g00109 Cpe-Chr17:666567 4.31E-18 dispersed
Cpe18g00064 Cpe-Chr18:1645596 Cpe16g00717 Cpe-Chr16:7303726 5.47E-14 dispersed
Cpe16g00717 Cpe-Chr16:7303726 Cpe20g00592 Cpe-Chr20:3612268 3.71E-110 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1087 . . . . Bpe07g00462 . . . . . . . . . . . Cpe16g00717 . . . . . . . Cla02g01817 Cam02g1923 Cec02g1948 . . Cmu02g1852 . . . . . . . . Cme11g01601 . . . . . . . Bma12g00592 . . . . . . . . . Bhi10g00958 . . . Hepe08g0633 . . . . . . . . . . Csa06g01165 Chy11g01027 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000905 2 5 2 4 2 3 4 3 3 2 3 2 4 1 2 4 3 3 3 1 2 2 3 3 3 2 2 5 2 1 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00717 Cpe_Chr16 FPKM 2.095534 3.228067 12.908626 13.139651 67.234947 76.937881 72.019547 28.410408 27.486876 28.165665