Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00719 ATGAAGGGTGAGATTGATGACTGTCAGTTCCCACTTCCAGGGTTCCGATTCCACCCTACCGATGAAGAACTCGTCGGTTTTTATCTCCGGCGAAAGGTGGATAAGAAGGCCATCGGCACTGAGCTCATCAAGTCCACTGATATCTATAAGCATAGCCCTTGGGATCTTCCTAATAGTGGCAACAATTTGGGAGACAAGGAGTGGTACTTCTTTTGCAAAAGAGCAAGAAAATACAAGAACAGCATAAGACCAAATAGGGTTACAGGTTCAGGGTTTTGGAAAGCAACTGGAATTGACAAGGTGATTTGCTCTCATGGAGGACAAGGAAATCGCTGCATTGGCCTCAAGAAAACCCTTGTCTATTACAAAGGAAACGCAGGCAGAGGCACCAAAACTGAGTGGATGATGCATGAATTCCGCCTCCCTTCCCACACTCTTAATACTCCTCCTTCCATCTTTGCAAGAATCAGAAACAATCTTCAAGAAGCTGAAATTTGGACGTTGTGTCGAATATTTCAGCGAAGCGTTTCGAGTACGAAATATGCACCAAATTGTAGGAAGATTGCAGCTGGGAATGATGGTTCAATCAATATGAATTCAAATGATAATTCATTTTATAGTCAAGATCAGTGCTATGATGGAGATAGCAATTACATTAGTTTCGGCTCTTCCTTCATTAATTTTGAGGAGAAGAAGCCTTTAATTACTGATCATCCATTGATGATGAATTTTAGCTCCATCTCTGAAGAACGAGAACGAGAACGAGAACGAGAACGAGAACGAGAACGAGAACGAGATCCTTGTTCTTCTATAATCCAATCGCCGCCATCGAGCTTCTCTAATTTTGATGGGGATGCTACTGATCATCTGTCGAGAAGAAGTCCATTGCCCTCGAACTCATCAAACAAATCGATATCTATCGACACAACCCTTGGGATCTTCCTTAGAGTTGAGGTGATTTATAAGGATGGAAGTGGGGCGGCGGGGGAGAAAGAGTGCTATGTGTTTGTGAAAAGAGGAAGGAAGTACAAGAACAGTGTTAGACCCAATAGGGTAACGGGGGCGGGGAGATACACACCAAATTGGAAAGAAATTCCGGCGAGCAACCGGGAAAGGAAGAGCACCAAAACAGTGGATCATCAAGCTTATGATGATGGAGATGGAAGAGAAACTTACATAAGTTTTAGCTCGAACCCGTTTAATGGGTTTGAAGAGAAGAAGCCATTCTTGGTTTGTGATGAAAGAAAACAATGGGAGGAGCTGACGATGATGATGATGAAGAAGAAGAACAGTGAAGCAGCTGAAGTGATATCTGTGTCGCCTCCTTTGTCTGTAAACCAGTCTCCAGCTTCATCGGGGTTCGATGAGGATGACTGGGATGAACTTAGATCCATCTTCTCCGACATAGCCATGAACGACGACGACGACGACTCCCAATCCCATCTTCCAGGGTTCCGCTTCCACCCCACCGATGAAGAGCTCGTGAGCTTCTACCTCCGCCGCAAGGTCCACAACAACCCCCTTCCTCTCGAACTCATCAAACAAATCGACATCTATAAACACAGCCCCTGGGATCTTCCTCGTAATGCATTGGGGGAGAAAGAATGGTACTTTTTCTGCAAACGTGGGAGGAAGTATAAGAATAGTGCGAGGCCAAACAGAGTAACGGGATCTGGGTTTTGGAAAGCCACTGGAATTGATAAGCCAATTTATCATGATCGCTCTGTTCTTGTTGGGTTGAAGAAGACGCTTGTTTATTACCGTGGAAGCGCCGGTAAAGCCACTAAAACGCAGTGGATGATGAATGAATTTCGTCTCCCTTCTTCTTCTTCTTCTTCCTCTGCCAGCCTCGATGAAGCTGAAATTTGGACTTTGTGTCGTATATTCAAACGGAATATCTCGACCAGAAAACCCAATGCACCGAACTGGAGGGAGGTTCCGGCGGCCAAAAACAGAGCTCTGGAGAATATGAACTTCAGAGCAACGAGCAATAGATATTCCGATGAACAGAGTAGCTACATAAGTTTTTCCTCTGACTATTCGTTTATCAGTTTTTCCGATCAGAGTCAGATGACGCACGGCGGCCAATCCATGAGGAATTTTTGCAGCCGGAGTGAGCAGCAGCCGTCGGGCAATCGTAATTCGTTGGCAAACGTATCGCCGTCGTCGAGCTTCTCGGATTTTGATGAGGATGCCACTGATTTATTTGGATATGAGAAATGGGAAGAGCTGAAATCAATTTTGGAATCTGATCTTGATTCATGA 2265 44.86 MKGEIDDCQFPLPGFRFHPTDEELVGFYLRRKVDKKAIGTELIKSTDIYKHSPWDLPNSGNNLGDKEWYFFCKRARKYKNSIRPNRVTGSGFWKATGIDKVICSHGGQGNRCIGLKKTLVYYKGNAGRGTKTEWMMHEFRLPSHTLNTPPSIFARIRNNLQEAEIWTLCRIFQRSVSSTKYAPNCRKIAAGNDGSINMNSNDNSFYSQDQCYDGDSNYISFGSSFINFEEKKPLITDHPLMMNFSSISEERERERERERERERERDPCSSIIQSPPSSFSNFDGDATDHLSRRSPLPSNSSNKSISIDTTLGIFLRVEVIYKDGSGAAGEKECYVFVKRGRKYKNSVRPNRVTGAGRYTPNWKEIPASNRERKSTKTVDHQAYDDGDGRETYISFSSNPFNGFEEKKPFLVCDERKQWEELTMMMMKKKNSEAAEVISVSPPLSVNQSPASSGFDEDDWDELRSIFSDIAMNDDDDDSQSHLPGFRFHPTDEELVSFYLRRKVHNNPLPLELIKQIDIYKHSPWDLPRNALGEKEWYFFCKRGRKYKNSARPNRVTGSGFWKATGIDKPIYHDRSVLVGLKKTLVYYRGSAGKATKTQWMMNEFRLPSSSSSSSASLDEAEIWTLCRIFKRNISTRKPNAPNWREVPAAKNRALENMNFRATSNRYSDEQSSYISFSSDYSFISFSDQSQMTHGGQSMRNFCSRSEQQPSGNRNSLANVSPSSSFSDFDEDATDLFGYEKWEELKSILESDLDS 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7324114 7338174 + Cp4.1LG16g07250.1 Cpe16g00719 483094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00719 754 SUPERFAMILY NAC domain 11 174 IPR036093 GO:0003677|GO:0006355
Cpe16g00719 754 PANTHER - 4 293 - -
Cpe16g00719 754 PANTHER - 471 749 - -
Cpe16g00719 754 SUPERFAMILY NAC domain 479 631 IPR036093 GO:0003677|GO:0006355
Cpe16g00719 754 MobiDBLite consensus disorder prediction 243 302 - -
Cpe16g00719 754 ProSiteProfiles NAC domain profile. 481 631 IPR003441 GO:0003677|GO:0006355
Cpe16g00719 754 Gene3D NAC domain 20 177 IPR036093 GO:0003677|GO:0006355
Cpe16g00719 754 Gene3D NAC domain 490 634 IPR036093 GO:0003677|GO:0006355
Cpe16g00719 754 ProSiteProfiles NAC domain profile. 11 174 IPR003441 GO:0003677|GO:0006355
Cpe16g00719 754 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 327 357 - -
Cpe16g00719 754 Pfam No apical meristem (NAM) protein 13 141 IPR003441 GO:0003677|GO:0006355
Cpe16g00719 754 Pfam No apical meristem (NAM) protein 483 606 IPR003441 GO:0003677|GO:0006355
Cpe16g00719 754 SUPERFAMILY NAC domain 327 366 IPR036093 GO:0003677|GO:0006355
Cpe16g00719 754 MobiDBLite consensus disorder prediction 247 268 - -
Cpe16g00719 754 PANTHER - 327 357 - -
Cpe16g00719 754 MobiDBLite consensus disorder prediction 694 728 - -
Cpe16g00719 754 MobiDBLite consensus disorder prediction 270 285 - -
Cpe16g00719 754 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 293 - -
Cpe16g00719 754 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 471 749 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00855 Cpe16g00719 CCT
Cpe15g00886 Cpe16g00719 CCT
Cpe05g01035 Cpe16g00719 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00719 Cpe-Chr16:7324114 Cpe02g00715 Cpe-Chr2:4524572 1.44E-44 dispersed
Cpe15g00886 Cpe-Chr15:8560357 Cpe16g00719 Cpe-Chr16:7324114 3.04E-07 wgd
Cpe16g00719 Cpe-Chr16:7324114 Cpe04g00855 Cpe-Chr4:7883661 8.24E-08 wgd
Cpe16g00719 Cpe-Chr16:7324114 Cpe05g01561 Cpe-Chr5:10733902 2.02E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50741 PF02365 NAM 5.90E-36 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00719 - - cmos:111448651 548.125