Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00727 ATGGCGTCCGGGAACTCGTTGAATGATCATTTATCTAAGAAGACTTCATTTTGGGGCTTGTCATTGTGGGTTTTGATATGCATTTGCATTGGTGCATTCATAGTTTTGATTCTTGGTTTGTTATCCATCTGGATCCTGTTTCGAAAAAAATCTAAAAGATCCATGGACAAGCTCCCCATTTCCCAGATACCTAATTTTTCAAAAGATATCAGGATAGATCAGGTTGGGACTCAAATTCCCAATGATCACCCTGAAAATAGGCTTCTTTCTGTTGATGTCAAAAGAAATCTTGAACATTCTGAAGTTATGGCTGTCACGAAATCGAGTGAACCTGATAACAATAGCCAATGTAGTTCCACTTATCAACACGAAAAACTTGGCAATTCACAATCTGGGGAAGAAGGAAGCTCTGGAAATGCTCGGAAGCAGGCTTCGAGGTCGCATGGTGGATATGGAGGAATTGTGCCACCGTCTCCTCTCGTTGGCTTGCCAGAAATTTCGCATCTTGGGTGGGGTCACTGGTTCACTCTCAGGGATCTAGAGCTTGCTACGAATCGTTTTTCGACTGAGAATATTCTTGGGGAAGGAGGATATGGAGTTGTGTATAAGGGCAGACTCATCAATGGCACTGAGGTTGCAGTGAAAAAACTTCTCAATAATCTGGGTCAGGCTGAGAAAGAATTTAGAGTTGAAGTGGAAGCTATTGGCCATGTTCGACATAAGAATCTCGTCCGACTGCTCGGTTATTGCATAGAAGGAGTTCATAGGATGCTAGTATATGAGTATGTGAACAATGGTAATCTAGAACAGTGGCTACACGGAGCCATGAGCCAACACGGCACGTTTACTTGGGAGGCTCGCATGAGGGTGCTTCTTGGCACGGCTAAGGCGCTTGCCTATTTACACGAAGCAATCGAGCCGAAAGTTGTTCATAGAGATATCAAATCGAGCAACATTTTGATTGATGATGAGTTCAATGCCAAAGTTTCTGATTTTGGATTGGCCAAACTCTTGGGCTCTGGAGAGAGTCACATCACAACTAGAGTTATGGGAACATTTGGGTATGTGGCACCAGAATATGCAAATACGGGCTTGTTGAATGAAAAGAGTGACATTTATAGCTTTGGCGTTCTCCTGCTAGAAGCAATTACCGGGAGGGACCCTGTGGACTATGCTCGTCCTTCTAATGAGGTTAATCTCGTCGAGTGGCTAAAGATGATGGTAGCAACAAGGAGAGCAGAGGAAGTTGTGGACATGAACCTTGAGACCAAGCCAACAACTCGTGCTTTAAAACGTGCCCTTCTTGTCGCACTTCGGTGTATCGATCCAGAATCAATCAAGAGACCCAAGATGAGTCAAGTTGTACGAATGCTCGAAGCCGACGAATTTCCACTGCACGAGGATAGAAGGAACCGAAAAAGCCGATCAATAAGCTTGGAGATCGAGTCGATGAAAGAAATATCAGGTTCAGAGGCGACGGGTGGGCCATCGGAGAGCCATAAATCAGAGAGAAACCATGGATAG 1524 44.49 MASGNSLNDHLSKKTSFWGLSLWVLICICIGAFIVLILGLLSIWILFRKKSKRSMDKLPISQIPNFSKDIRIDQVGTQIPNDHPENRLLSVDVKRNLEHSEVMAVTKSSEPDNNSQCSSTYQHEKLGNSQSGEEGSSGNARKQASRSHGGYGGIVPPSPLVGLPEISHLGWGHWFTLRDLELATNRFSTENILGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMSQHGTFTWEARMRVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLGSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYARPSNEVNLVEWLKMMVATRRAEEVVDMNLETKPTTRALKRALLVALRCIDPESIKRPKMSQVVRMLEADEFPLHEDRRNRKSRSISLEIESMKEISGSEATGGPSESHKSERNHG 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7384870 7389535 + Cp4.1LG16g07180.1 Cpe16g00727 483102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00727 507 Coils Coil 207 227 - -
Cpe16g00727 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Cpe16g00727 507 Gene3D Phosphorylase Kinase; domain 1 169 262 - -
Cpe16g00727 507 Pfam Protein kinase domain 188 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe16g00727 507 MobiDBLite consensus disorder prediction 466 507 - -
Cpe16g00727 507 CDD STKc_IRAK 193 459 - -
Cpe16g00727 507 MobiDBLite consensus disorder prediction 104 153 - -
Cpe16g00727 507 Gene3D Transferase(Phosphotransferase) domain 1 263 476 - -
Cpe16g00727 507 MobiDBLite consensus disorder prediction 466 480 - -
Cpe16g00727 507 ProSiteProfiles Protein kinase domain profile. 187 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe16g00727 507 SUPERFAMILY Protein kinase-like (PK-like) 171 463 IPR011009 -
Cpe16g00727 507 SMART serkin_6 187 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe16g00727 507 PANTHER OS01G0323000 PROTEIN 3 496 - -
Cpe16g00727 507 ProSitePatterns Protein kinases ATP-binding region signature. 193 216 IPR017441 GO:0005524
Cpe16g00727 507 PANTHER OS10G0497600 PROTEIN 3 496 - -
Cpe16g00727 507 MobiDBLite consensus disorder prediction 104 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00441 Cpe-Chr10:2576118 Cpe16g00727 Cpe-Chr16:7384870 0 dispersed
Cpe11g00144 Cpe-Chr11:786439 Cpe16g00727 Cpe-Chr16:7384870 7.56E-180 dispersed
Cpe11g00858 Cpe-Chr11:6979545 Cpe16g00727 Cpe-Chr16:7384870 1.48E-177 dispersed
Cpe12g00348 Cpe-Chr12:2348377 Cpe16g00727 Cpe-Chr16:7384870 1.27E-128 dispersed
Cpe16g00727 Cpe-Chr16:7384870 Cpe19g00628 Cpe-Chr19:5107618 2.47E-178 dispersed
Cpe17g00482 Cpe-Chr17:3577916 Cpe16g00727 Cpe-Chr16:7384870 4.68E-41 dispersed
Cpe15g00882 Cpe-Chr15:8512397 Cpe16g00727 Cpe-Chr16:7384870 9.97E-38 wgd
Cpe16g00727 Cpe-Chr16:7384870 Cpe04g00850 Cpe-Chr4:7847421 0 wgd
Cpe16g00727 Cpe-Chr16:7384870 Cpe05g01044 Cpe-Chr5:6907209 3.38E-47 wgd
Cpe16g00727 Cpe-Chr16:7384870 Cpe05g01549 Cpe-Chr5:10641832 4.98E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62909 PF00069 Pkinase 1.50E-48 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00727 - - csv:101214087 936.791