Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00732 ATGGGAAGAGGTAAGATTGAAATTAAACGAATTGAAAATACCACAAATCGTCAAGTCACCTTTTGCAAGAGAAGAAATGGTTTGCTTAAAAAAGCCTACGAGTTGTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCCACTCGTGGCCGTCTCTATGAATATGCCAATAACAGGCATATTCTTGGTGAAGCACTCAGCTCATTGTCTTTAAAGGACCTGAAAAGCTTGGAGGGCAGATTGGAGAGAGGAATCAGCAAAGTTAGGGCTAAAAAGAACGAAACCTTGTGTGCAGAGATGGAATTCATGCAAAAAAGGGAAATGGAGCTTCAGAATCACAACAACTATCTGCAAGCACAGATTGCTGAACATGAAAGAATACAACAACAGCAACAAACGAACATGATGCAAAGGGGAACGTATGAGACAGTGGGAGGAGGGCAGTACGAGGAGAACAGAAGCTATGGCGGCGTGGGGCTTATGGATTCCGACACCCATTACGCCCATCAAGACCATCTCACTGCCCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACAAAAATCTTGTTGTTGTTATTATTATTATTATTATTATTCTCAATCTCCAACCAACCAACTACCGAGGATGTCAAATAATAACTGCCTTTTGAAGCTCTCTGCTTCTGGCTGA 693 39.83 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNRHILGEALSSLSLKDLKSLEGRLERGISKVRAKKNETLCAEMEFMQKREMELQNHNNYLQAQIAEHERIQQQQQTNMMQRGTYETVGGGQYEENRSYGGVGLMDSDTHYAHQDHLTAPKKKKKKKKKKKKKKTQKSCCCYYYYYYYSQSPTNQLPRMSNNNCLLKLSASG 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7416046 7420166 - Cp4.1LG16g07400.1 Cpe16g00732 483107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00732 230 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 60 174 - -
Cpe16g00732 230 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 1 60 - -
Cpe16g00732 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe16g00732 230 ProSiteProfiles K-box domain profile. 33 129 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe16g00732 230 Coils Coil 76 96 - -
Cpe16g00732 230 Gene3D - 13 73 IPR036879 GO:0003677|GO:0046983
Cpe16g00732 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe16g00732 230 PANTHER MADS BOX PROTEIN 60 174 - -
Cpe16g00732 230 MobiDBLite consensus disorder prediction 175 189 - -
Cpe16g00732 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe16g00732 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe16g00732 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe16g00732 230 MobiDBLite consensus disorder prediction 170 189 - -
Cpe16g00732 230 Pfam K-box region 58 123 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe16g00732 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe16g00732 230 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Cpe16g00732 230 CDD MADS_MEF2_like 2 60 IPR033896 GO:0000977|GO:0045944
Cpe16g00732 230 PANTHER MADS BOX PROTEIN 1 60 - -
Cpe16g00732 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00732 Cpe-Chr16:7416046 Cpe19g01096 Cpe-Chr19:7418452 2.18E-66 dispersed
Cpe10g00122 Cpe-Chr10:785283 Cpe16g00732 Cpe-Chr16:7416046 1.11E-64 wgd
Cpe16g00732 Cpe-Chr16:7416046 Cpe20g00485 Cpe-Chr20:2812620 5.55E-43 wgd
Cpe16g00732 Cpe-Chr16:7416046 Cpe05g01055 Cpe-Chr5:6984166 1.41E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50743 PF01486 K-box 2.70E-18 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00732 K09264 - csv:101217987 276.559