Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00809 ATGGCGGAAGAACATCGATGCCAAGCGCCGAAGCTCTGCGTTAATAACTGCGGATTCTTTGGGAGTCCGGCGACTCGAGATCTTTGTTCGAAGTGCTACCGAGATCTGCAGATGAAGGAACAACAATCCTCCTCCGCCAAGCTCGCGCTAAACCAAACCCTAACATCCGCCGTTTCGTCATCCTCGTTCTCGGATGCCGCTTTGTTAGATCTGAAACCGGCTTCAACAGAAGCGAACCAGCCACTGGTGGAGGTGGCAGAGAAGGCGCAGACGAGAGCGGAAGTGGCGCCGGAACCCGCACAGCAGCAGCCGAGCCGGTGTATGACGTGCAGGCGGCGCGTGGGATTGACAGGGTTTAAGTGCAGGTGCGGGATGGTGTACTGTGGGACTCACCGGTACCCGGAGCAACACGGGTGTGAATTTGACTTCAAGCAGATGGGGAAGGATCAGATCGCAAAAGCGAATCCGGTGGTGAAAGGAGAGAAACTGCAGAAGATCTGA 501 55.89 MAEEHRCQAPKLCVNNCGFFGSPATRDLCSKCYRDLQMKEQQSSSAKLALNQTLTSAVSSSSFSDAALLDLKPASTEANQPLVEVAEKAQTRAEVAPEPAQQQPSRCMTCRRRVGLTGFKCRCGMVYCGTHRYPEQHGCEFDFKQMGKDQIAKANPVVKGEKLQKI 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7859759 7860259 - Cp4.1LG16g08180.1 Cpe16g00809 483184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00809 166 SUPERFAMILY AN1-like Zinc finger 92 161 IPR035896 -
Cpe16g00809 166 Pfam A20-like zinc finger 12 34 IPR002653 GO:0003677|GO:0008270
Cpe16g00809 166 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Cpe16g00809 166 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 55 - -
Cpe16g00809 166 Gene3D - 81 162 IPR035896 -
Cpe16g00809 166 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Cpe16g00809 166 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 166 - -
Cpe16g00809 166 Pfam AN1-like Zinc finger 107 143 IPR000058 GO:0008270
Cpe16g00809 166 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 166 - -
Cpe16g00809 166 ProSiteProfiles Zinc finger AN1-type profile. 101 147 IPR000058 GO:0008270
Cpe16g00809 166 Gene3D - 1 62 - -
Cpe16g00809 166 SMART AN1_Zf_4 107 144 IPR000058 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00277 Cpe-Chr10:1643495 Cpe16g00809 Cpe-Chr16:7859759 1.80E-58 dispersed
Cpe16g00809 Cpe-Chr16:7859759 Cpe19g00465 Cpe-Chr19:4108060 5.24E-60 dispersed
Cpe16g00809 Cpe-Chr16:7859759 Cpe05g00411 Cpe-Chr5:2318044 6.12E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00809 - - csv:101219115 252.677