Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00820 ATGTCGGGTTCTCGAGCTCCTAACTCCTCTGGACACCTTCCTGAGCAGATCATGCACTCTCTTAAGCGCCAGCTCCCCTTCTCTTCTATGAAACCGCCATTTGCATCTCCTGGGGACTATCACCGCTTCGCCCCGGACCCTCGACTCGCCGATCAAGAAGCTGACGCCATCGTAGTCAGATCTCCGTACATCACCGATGCTGGATATGAACAAACAATACTGGAAGTAACTATCTCAAGGGATGACATCATAACAGTATTAGATGACTTGATCAAGTCGTGCAGTACTATTCAATTGAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCTGACTCAACCGATAGAGCAGCTGGTCCTAGATTTTCTGAGGTCGCTAACAGTCCCCATCAAACACCTGTATCTGTGAAAGGAGGAAAGGGAAACAAATCAAGGCTTACTAAATGCAGTAGATCGGGGCCACAGACTCCCATGTCAAACGTTGGTTCACCTTCTGCCAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTAACAAAGAAGTTTATTAACCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTGAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTCGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGGTCAGGGGATGTCGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTTCCATGGAGGAGCGTGGATTAGACGAACAAATAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCCATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGACCCATTGATGTTTACCTTGTTAGTCAGTTTGAAGAAAAGTTTGAGGAGATAAATGGCGTGGAAGTGCCGCCAAGCTTGCCGTCAAGTTCAGGCTTTAATGAAGCACCTGCAACGACGATAGGAACAGAGGATACCAGGGGAAAGGAAATTGAAACGCGGGAACAAGATGTACACAGAATGTGCTCCGATCTAAATGCTTCACAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCCGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATCACTGACATGTGGAGAACTGAACCTGGCGTTGAGTGGAACGATTTGGGTACATTTCATGAAGATTACAGTATTGCCAATGACAGCACCCCCGAAACCCAGAATCCACTTCCCAGTAATGCGCCTGATATGCCTTCTTCTGCTAATCCTTCTAGCAGCTGA 1446 45.85 MSGSRAPNSSGHLPEQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPRLADQEADAIVVRSPYITDAGYEQTILEVTISRDDIITVLDDLIKSCSTIQLKRKSEVADYEADSTDRAAGPRFSEVANSPHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPSANNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLSMEERGLDEQIRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVPPSLPSSSGFNEAPATTIGTEDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPGVEWNDLGTFHEDYSIANDSTPETQNPLPSNAPDMPSSANPSSS 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7906566 7913211 - Cp4.1LG16g08150.1 Cpe16g00820 483195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00820 481 MobiDBLite consensus disorder prediction 144 170 - -
Cpe16g00820 481 Gene3D - 169 242 IPR036388 -
Cpe16g00820 481 Coils Coil 191 211 - -
Cpe16g00820 481 SMART E2F_TDP_2 175 240 IPR003316 GO:0005667|GO:0006355
Cpe16g00820 481 PANTHER TRANSCRIPTION FACTOR E2F 19 471 IPR015633 GO:0000978|GO:0006357
Cpe16g00820 481 CDD E2F_DD 251 340 IPR032198 GO:0046983
Cpe16g00820 481 MobiDBLite consensus disorder prediction 110 170 - -
Cpe16g00820 481 MobiDBLite consensus disorder prediction 352 371 - -
Cpe16g00820 481 Pfam E2F/DP family winged-helix DNA-binding domain 177 240 IPR003316 GO:0005667|GO:0006355
Cpe16g00820 481 Gene3D - 247 340 - -
Cpe16g00820 481 MobiDBLite consensus disorder prediction 451 481 - -
Cpe16g00820 481 Coils Coil 253 273 - -
Cpe16g00820 481 MobiDBLite consensus disorder prediction 354 371 - -
Cpe16g00820 481 SUPERFAMILY E2F-DP heterodimerization region 252 340 IPR037241 -
Cpe16g00820 481 PANTHER TRANSCRIPTION FACTOR E2FB 19 471 - -
Cpe16g00820 481 Pfam E2F transcription factor CC-MB domain 271 339 IPR032198 GO:0046983
Cpe16g00820 481 SUPERFAMILY Winged helix DNA-binding domain 175 238 IPR036390 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00398 Cpe16g00820 CCT
Cpe05g00398 Cpe16g00820 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00370 Cpe-Chr7:2375874 Cpe16g00820 Cpe-Chr16:7906566 8.21E-64 dispersed
Cpe09g01047 Cpe-Chr9:9165627 Cpe16g00820 Cpe-Chr16:7906566 1.68E-11 dispersed
Cpe11g00250 Cpe-Chr11:1356006 Cpe16g00820 Cpe-Chr16:7906566 2.63E-71 dispersed
Cpe16g00820 Cpe-Chr16:7906566 Cpe19g00497 Cpe-Chr19:4261540 5.81E-151 dispersed
Cpe10g00310 Cpe-Chr10:1803394 Cpe16g00820 Cpe-Chr16:7906566 7.97E-147 wgd
Cpe16g00820 Cpe-Chr16:7906566 Cpe05g00446 Cpe-Chr5:2557752 0 wgd
Cpe16g00820 Cpe-Chr16:7906566 Cpe05g00398 Cpe-Chr5:2254187 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50749 PF16421 E2F_CC-MB 2.30E-22 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00820 K06620 - csv:101219318 800.816