Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe16g00824 | ATGAGAATGGAAGAAGACGGCGGCGGCGATCTTGAAGTCCCCTCCTATTTCCTCTGCCCAATTTCCCTCCAATTGATGAGAGATCCGGTGACCATCTCCACCGGCATCACCTACGACCGATCCAACATCGAGAAATGGCTCTTCTCATGCAACAAGAGAACTTGCCCCATCACTAAACAGCCCTTGTCCGATCCCGATTTGGTAACCCCAAACCACACCCTTCGCCGTTTGATCCAAGCTTGGTGCACCCTCAACGCCTCTCATGGAGTTGAACGAATTCCAACTCCCAAGTCACCCATTGACAAAACCCATGTGGCCAAGATCCTCAAACAGGCCAAGAACTTCCCCAGTTCCAACCACAAGTGCCTCCTTGCACTCAAAGCCATTGCCTTGGAGAGTGAAAGAAATTGCACCCTTGTGGCTCAATCCGATGGAGCTTTTGAGTTTGTAGCCGCCGTTATTAAGAGTGGTGGTGATAAGAACATTGGGTCCATTGAATTGGCGGTGGAAATTCTGTTCCACATCAAATCCTCGGAAGCCCATCTCAAGAATCTCGTAAATGGCGATGGTAACTTCATAAACTCTCTTACTTTTGTCCTCAAAAATGGGAACTGCCAATCTAGAGCCTACGCCATAATGTTGCTCAAATCAAGCTTGGAACTTGCTGATCCAATTCGGTTGATGAGCATTGAGAGGGAACTTCTTAGTGAAATTGTGCGCGTTATACATGATCATATATCTCACCAAGCCTCCAAATCCGCGTTGAAGGTTCTAGCCGAGGTGTGCCCTTGGGGGAGGAACCGTGTGAAAGCGGTCGAGGGCGGGGCAGTCGGCGTGTTGGTGGAGCTGCTTTTGAACTCGACCGAGAGGCGGTGGTCGGAGATAGGGCTGGTGATTTTGGATCAGCTGTGTGGGTGCGCAGAGGGACGAGAGAAGCTGATGGAACACAGTGCTGGAGTTGCAATTGTGTCGAAGAAAATACTTAGGGTTTCGGCAATGGCGAGCGATCGAGCGGTGAGGATATTGTCGTCGATATGTCGGTTTTCGGCGTCGGTAAAGGTAGTTCAAGAAATGTTGGAGGTGGGAGTCGTGGCAAAACTGTGTTTGGTGTTGCAAATGGATTGTAGCTCGAAGACGAGAGAGAAGGCGAGGGATATACTAAAGTTGCATTCGAGGGTTTGGAGTAATTCTTCTTGTATTCCGCCACATTTGGCGTCTGCTTATCCATCGTCACCGTCTTGA | 1242 | 49.6 | MRMEEDGGGDLEVPSYFLCPISLQLMRDPVTISTGITYDRSNIEKWLFSCNKRTCPITKQPLSDPDLVTPNHTLRRLIQAWCTLNASHGVERIPTPKSPIDKTHVAKILKQAKNFPSSNHKCLLALKAIALESERNCTLVAQSDGAFEFVAAVIKSGGDKNIGSIELAVEILFHIKSSEAHLKNLVNGDGNFINSLTFVLKNGNCQSRAYAIMLLKSSLELADPIRLMSIERELLSEIVRVIHDHISHQASKSALKVLAEVCPWGRNRVKAVEGGAVGVLVELLLNSTERRWSEIGLVILDQLCGCAEGREKLMEHSAGVAIVSKKILRVSAMASDRAVRILSSICRFSASVKVVQEMLEVGVVAKLCLVLQMDCSSKTREKARDILKLHSRVWSNSSCIPPHLASAYPSSPS | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 7940610 | 7941851 | - | Cp4.1LG16g08260.1 | Cpe16g00824 | 483199 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe16g00824 | 413 | SUPERFAMILY | ARM repeat | 184 | 389 | IPR016024 | - | |
Cpe16g00824 | 413 | PANTHER | WDSAM1 PROTEIN | 12 | 409 | IPR045185 | GO:0061630 | |
Cpe16g00824 | 413 | CDD | RING-Ubox_PUB | 17 | 60 | IPR045210 | - | |
Cpe16g00824 | 413 | Gene3D | - | 101 | 404 | IPR011989 | - | |
Cpe16g00824 | 413 | SUPERFAMILY | RING/U-box | 8 | 87 | - | - | |
Cpe16g00824 | 413 | SMART | Ubox_2 | 16 | 81 | IPR003613 | GO:0004842|GO:0016567 | |
Cpe16g00824 | 413 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 92 | IPR013083 | - | |
Cpe16g00824 | 413 | ProSiteProfiles | U-box domain profile. | 12 | 88 | IPR003613 | GO:0004842|GO:0016567 | |
Cpe16g00824 | 413 | PANTHER | OS11G0573500 PROTEIN | 12 | 409 | - | - | |
Cpe16g00824 | 413 | Pfam | U-box domain | 13 | 83 | IPR003613 | GO:0004842|GO:0016567 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe10g00346 | Cpe-Chr10:2037028 | Cpe16g00824 | Cpe-Chr16:7940610 | 4.52E-34 | dispersed | |
Cpe10g01029 | Cpe-Chr10:5977745 | Cpe16g00824 | Cpe-Chr16:7940610 | 1.32E-141 | dispersed | |
Cpe12g00050 | Cpe-Chr12:271851 | Cpe16g00824 | Cpe-Chr16:7940610 | 2.51E-55 | dispersed | |
Cpe16g00824 | Cpe-Chr16:7940610 | Cpe19g00185 | Cpe-Chr19:1508431 | 3.43E-122 | dispersed | |
Cpe18g00219 | Cpe-Chr18:3845688 | Cpe16g00824 | Cpe-Chr16:7940610 | 1.12E-33 | dispersed | |
Cpe19g00539 | Cpe-Chr19:4573975 | Cpe16g00824 | Cpe-Chr16:7940610 | 2.79E-40 | dispersed | |
Cpe16g00824 | Cpe-Chr16:7940610 | Cpe08g00965 | Cpe-Chr8:7576436 | 1.65E-143 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe16g00824 | - | - | csv:101203877 | 711.064 |