Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00824 ATGAGAATGGAAGAAGACGGCGGCGGCGATCTTGAAGTCCCCTCCTATTTCCTCTGCCCAATTTCCCTCCAATTGATGAGAGATCCGGTGACCATCTCCACCGGCATCACCTACGACCGATCCAACATCGAGAAATGGCTCTTCTCATGCAACAAGAGAACTTGCCCCATCACTAAACAGCCCTTGTCCGATCCCGATTTGGTAACCCCAAACCACACCCTTCGCCGTTTGATCCAAGCTTGGTGCACCCTCAACGCCTCTCATGGAGTTGAACGAATTCCAACTCCCAAGTCACCCATTGACAAAACCCATGTGGCCAAGATCCTCAAACAGGCCAAGAACTTCCCCAGTTCCAACCACAAGTGCCTCCTTGCACTCAAAGCCATTGCCTTGGAGAGTGAAAGAAATTGCACCCTTGTGGCTCAATCCGATGGAGCTTTTGAGTTTGTAGCCGCCGTTATTAAGAGTGGTGGTGATAAGAACATTGGGTCCATTGAATTGGCGGTGGAAATTCTGTTCCACATCAAATCCTCGGAAGCCCATCTCAAGAATCTCGTAAATGGCGATGGTAACTTCATAAACTCTCTTACTTTTGTCCTCAAAAATGGGAACTGCCAATCTAGAGCCTACGCCATAATGTTGCTCAAATCAAGCTTGGAACTTGCTGATCCAATTCGGTTGATGAGCATTGAGAGGGAACTTCTTAGTGAAATTGTGCGCGTTATACATGATCATATATCTCACCAAGCCTCCAAATCCGCGTTGAAGGTTCTAGCCGAGGTGTGCCCTTGGGGGAGGAACCGTGTGAAAGCGGTCGAGGGCGGGGCAGTCGGCGTGTTGGTGGAGCTGCTTTTGAACTCGACCGAGAGGCGGTGGTCGGAGATAGGGCTGGTGATTTTGGATCAGCTGTGTGGGTGCGCAGAGGGACGAGAGAAGCTGATGGAACACAGTGCTGGAGTTGCAATTGTGTCGAAGAAAATACTTAGGGTTTCGGCAATGGCGAGCGATCGAGCGGTGAGGATATTGTCGTCGATATGTCGGTTTTCGGCGTCGGTAAAGGTAGTTCAAGAAATGTTGGAGGTGGGAGTCGTGGCAAAACTGTGTTTGGTGTTGCAAATGGATTGTAGCTCGAAGACGAGAGAGAAGGCGAGGGATATACTAAAGTTGCATTCGAGGGTTTGGAGTAATTCTTCTTGTATTCCGCCACATTTGGCGTCTGCTTATCCATCGTCACCGTCTTGA 1242 49.6 MRMEEDGGGDLEVPSYFLCPISLQLMRDPVTISTGITYDRSNIEKWLFSCNKRTCPITKQPLSDPDLVTPNHTLRRLIQAWCTLNASHGVERIPTPKSPIDKTHVAKILKQAKNFPSSNHKCLLALKAIALESERNCTLVAQSDGAFEFVAAVIKSGGDKNIGSIELAVEILFHIKSSEAHLKNLVNGDGNFINSLTFVLKNGNCQSRAYAIMLLKSSLELADPIRLMSIERELLSEIVRVIHDHISHQASKSALKVLAEVCPWGRNRVKAVEGGAVGVLVELLLNSTERRWSEIGLVILDQLCGCAEGREKLMEHSAGVAIVSKKILRVSAMASDRAVRILSSICRFSASVKVVQEMLEVGVVAKLCLVLQMDCSSKTREKARDILKLHSRVWSNSSCIPPHLASAYPSSPS 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7940610 7941851 - Cp4.1LG16g08260.1 Cpe16g00824 483199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00824 413 SUPERFAMILY ARM repeat 184 389 IPR016024 -
Cpe16g00824 413 PANTHER WDSAM1 PROTEIN 12 409 IPR045185 GO:0061630
Cpe16g00824 413 CDD RING-Ubox_PUB 17 60 IPR045210 -
Cpe16g00824 413 Gene3D - 101 404 IPR011989 -
Cpe16g00824 413 SUPERFAMILY RING/U-box 8 87 - -
Cpe16g00824 413 SMART Ubox_2 16 81 IPR003613 GO:0004842|GO:0016567
Cpe16g00824 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 92 IPR013083 -
Cpe16g00824 413 ProSiteProfiles U-box domain profile. 12 88 IPR003613 GO:0004842|GO:0016567
Cpe16g00824 413 PANTHER OS11G0573500 PROTEIN 12 409 - -
Cpe16g00824 413 Pfam U-box domain 13 83 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00346 Cpe-Chr10:2037028 Cpe16g00824 Cpe-Chr16:7940610 4.52E-34 dispersed
Cpe10g01029 Cpe-Chr10:5977745 Cpe16g00824 Cpe-Chr16:7940610 1.32E-141 dispersed
Cpe12g00050 Cpe-Chr12:271851 Cpe16g00824 Cpe-Chr16:7940610 2.51E-55 dispersed
Cpe16g00824 Cpe-Chr16:7940610 Cpe19g00185 Cpe-Chr19:1508431 3.43E-122 dispersed
Cpe18g00219 Cpe-Chr18:3845688 Cpe16g00824 Cpe-Chr16:7940610 1.12E-33 dispersed
Cpe19g00539 Cpe-Chr19:4573975 Cpe16g00824 Cpe-Chr16:7940610 2.79E-40 dispersed
Cpe16g00824 Cpe-Chr16:7940610 Cpe08g00965 Cpe-Chr8:7576436 1.65E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00824 - - csv:101203877 711.064