Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe16g00834 | ATGAAGAAGAAGCTCGATACCCGTTTTCCAGCTGCTCGGATTAAGAAGATTATGCAGGCTGATGAAGACGTAGGGAAGATTGCTATGGCAGTCCCACTTTTAGTCTCAAAAGCTCTGGAACTATTTTTACAAGATTTATGTGACAGGACATATGAGATTACTCTGAAGAGGGGGGCTAAGACAATGAACTCTTTGCACTTAAAACAATGCATACAGACGTTTAATGTTTTTGATTTCTTGAGGGATGTTGTTGGCAAGGTCCCTGATTTAGGTGCCTCTGATGCTGCGGAGGACCGTTGTATTTCGAAACGAAGGAAAGTTGAAGATGAAGATGGTGGTAATGATAGTGAAGAAGAGTCCAAAAGGAGTAAGACGACAGAGGCTGGTCACAACATTAGTGGCCGAGGAAGGGGTAGAGGCAGAGGTAGAGGTCGTGGGCGTAGTAGTAGGCATTCGGAGAAGGATACAGCCATACATTCTGATAACTTTGAAGAAGATTTGGAAATTCCTAGTCATCCTGGCAACAACCTCGAAAAAACTATGCCGGACAACGGTGTAGCAGAAGCTCGAATGGAGAACGACAATATTCCTATTGACAAAGCTGTAGAACCATCAGTCCGAAACTTCGACTTGAACGTAAACTTGGACGAAGATGGGGACTCAACTTCAACTCCAGTGGCTGCTTCTACAGGTTCACCAGTAAAGCCCCTGACTGACTCGAAACACGACGAGTATCCTGGTTGGTCAGTGGCTGAAATGGAAAAGATGGTTATCGATCCAATTCAACTAGCGAATTTGAATAAGAGTATAGATGATGAGGAAGATTATGACGAAGAAGGTTAG | 843 | 43.89 | MKKKLDTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTMNSLHLKQCIQTFNVFDFLRDVVGKVPDLGASDAAEDRCISKRRKVEDEDGGNDSEEESKRSKTTEAGHNISGRGRGRGRGRGRGRSSRHSEKDTAIHSDNFEEDLEIPSHPGNNLEKTMPDNGVAEARMENDNIPIDKAVEPSVRNFDLNVNLDEDGDSTSTPVAASTGSPVKPLTDSKHDEYPGWSVAEMEKMVIDPIQLANLNKSIDDEEDYDEEG | 280 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 8017190 | 8021054 | + | Cp4.1LG16g08380.1 | Cpe16g00834 | 483209 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe16g00834 | 280 | MobiDBLite | consensus disorder prediction | 103 | 128 | - | - | |
| Cpe16g00834 | 280 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 8 | 71 | IPR003958 | - | |
| Cpe16g00834 | 280 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 1 | 279 | - | - | |
| Cpe16g00834 | 280 | MobiDBLite | consensus disorder prediction | 216 | 236 | - | - | |
| Cpe16g00834 | 280 | SUPERFAMILY | Histone-fold | 3 | 89 | IPR009072 | GO:0046982 | |
| Cpe16g00834 | 280 | Gene3D | Histone, subunit A | 1 | 72 | IPR009072 | GO:0046982 | |
| Cpe16g00834 | 280 | MobiDBLite | consensus disorder prediction | 103 | 182 | - | - | |
| Cpe16g00834 | 280 | MobiDBLite | consensus disorder prediction | 216 | 243 | - | - | |
| Cpe16g00834 | 280 | MobiDBLite | consensus disorder prediction | 148 | 172 | - | - | |
| Cpe16g00834 | 280 | PANTHER | HISTONE SUPERFAMILY PROTEIN | 1 | 279 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe09g00475 | Cpe-Chr9:3124197 | Cpe16g00834 | Cpe-Chr16:8017190 | 5.55E-55 | dispersed | |
| Cpe16g00834 | Cpe-Chr16:8017190 | Cpe18g00070 | Cpe-Chr18:1728604 | 5.47E-11 | dispersed | |
| Cpe16g00834 | Cpe-Chr16:8017190 | Cpe01g01183 | Cpe-Chr1:7036369 | 4.48E-71 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 50751 | PF00808 | CBFD_NFYB_HMF | 1.40E-18 | CL0012 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe16g00834 | K21752 | - | csv:101204606 | 464.151 |