Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00834 ATGAAGAAGAAGCTCGATACCCGTTTTCCAGCTGCTCGGATTAAGAAGATTATGCAGGCTGATGAAGACGTAGGGAAGATTGCTATGGCAGTCCCACTTTTAGTCTCAAAAGCTCTGGAACTATTTTTACAAGATTTATGTGACAGGACATATGAGATTACTCTGAAGAGGGGGGCTAAGACAATGAACTCTTTGCACTTAAAACAATGCATACAGACGTTTAATGTTTTTGATTTCTTGAGGGATGTTGTTGGCAAGGTCCCTGATTTAGGTGCCTCTGATGCTGCGGAGGACCGTTGTATTTCGAAACGAAGGAAAGTTGAAGATGAAGATGGTGGTAATGATAGTGAAGAAGAGTCCAAAAGGAGTAAGACGACAGAGGCTGGTCACAACATTAGTGGCCGAGGAAGGGGTAGAGGCAGAGGTAGAGGTCGTGGGCGTAGTAGTAGGCATTCGGAGAAGGATACAGCCATACATTCTGATAACTTTGAAGAAGATTTGGAAATTCCTAGTCATCCTGGCAACAACCTCGAAAAAACTATGCCGGACAACGGTGTAGCAGAAGCTCGAATGGAGAACGACAATATTCCTATTGACAAAGCTGTAGAACCATCAGTCCGAAACTTCGACTTGAACGTAAACTTGGACGAAGATGGGGACTCAACTTCAACTCCAGTGGCTGCTTCTACAGGTTCACCAGTAAAGCCCCTGACTGACTCGAAACACGACGAGTATCCTGGTTGGTCAGTGGCTGAAATGGAAAAGATGGTTATCGATCCAATTCAACTAGCGAATTTGAATAAGAGTATAGATGATGAGGAAGATTATGACGAAGAAGGTTAG 843 43.89 MKKKLDTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTMNSLHLKQCIQTFNVFDFLRDVVGKVPDLGASDAAEDRCISKRRKVEDEDGGNDSEEESKRSKTTEAGHNISGRGRGRGRGRGRGRSSRHSEKDTAIHSDNFEEDLEIPSHPGNNLEKTMPDNGVAEARMENDNIPIDKAVEPSVRNFDLNVNLDEDGDSTSTPVAASTGSPVKPLTDSKHDEYPGWSVAEMEKMVIDPIQLANLNKSIDDEEDYDEEG 280
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 8017190 8021054 + Cp4.1LG16g08380.1 Cpe16g00834 483209
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00834 280 MobiDBLite consensus disorder prediction 103 128 - -
Cpe16g00834 280 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Cpe16g00834 280 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 279 - -
Cpe16g00834 280 MobiDBLite consensus disorder prediction 216 236 - -
Cpe16g00834 280 SUPERFAMILY Histone-fold 3 89 IPR009072 GO:0046982
Cpe16g00834 280 Gene3D Histone, subunit A 1 72 IPR009072 GO:0046982
Cpe16g00834 280 MobiDBLite consensus disorder prediction 103 182 - -
Cpe16g00834 280 MobiDBLite consensus disorder prediction 216 243 - -
Cpe16g00834 280 MobiDBLite consensus disorder prediction 148 172 - -
Cpe16g00834 280 PANTHER HISTONE SUPERFAMILY PROTEIN 1 279 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00475 Cpe-Chr9:3124197 Cpe16g00834 Cpe-Chr16:8017190 5.55E-55 dispersed
Cpe16g00834 Cpe-Chr16:8017190 Cpe18g00070 Cpe-Chr18:1728604 5.47E-11 dispersed
Cpe16g00834 Cpe-Chr16:8017190 Cpe01g01183 Cpe-Chr1:7036369 4.48E-71 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50751 PF00808 CBFD_NFYB_HMF 1.40E-18 CL0012 Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00834 K21752 - csv:101204606 464.151