Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00834 ATGAAGAAGAAGCTCGATACCCGTTTTCCAGCTGCTCGGATTAAGAAGATTATGCAGGCTGATGAAGACGTAGGGAAGATTGCTATGGCAGTCCCACTTTTAGTCTCAAAAGCTCTGGAACTATTTTTACAAGATTTATGTGACAGGACATATGAGATTACTCTGAAGAGGGGGGCTAAGACAATGAACTCTTTGCACTTAAAACAATGCATACAGACGTTTAATGTTTTTGATTTCTTGAGGGATGTTGTTGGCAAGGTCCCTGATTTAGGTGCCTCTGATGCTGCGGAGGACCGTTGTATTTCGAAACGAAGGAAAGTTGAAGATGAAGATGGTGGTAATGATAGTGAAGAAGAGTCCAAAAGGAGTAAGACGACAGAGGCTGGTCACAACATTAGTGGCCGAGGAAGGGGTAGAGGCAGAGGTAGAGGTCGTGGGCGTAGTAGTAGGCATTCGGAGAAGGATACAGCCATACATTCTGATAACTTTGAAGAAGATTTGGAAATTCCTAGTCATCCTGGCAACAACCTCGAAAAAACTATGCCGGACAACGGTGTAGCAGAAGCTCGAATGGAGAACGACAATATTCCTATTGACAAAGCTGTAGAACCATCAGTCCGAAACTTCGACTTGAACGTAAACTTGGACGAAGATGGGGACTCAACTTCAACTCCAGTGGCTGCTTCTACAGGTTCACCAGTAAAGCCCCTGACTGACTCGAAACACGACGAGTATCCTGGTTGGTCAGTGGCTGAAATGGAAAAGATGGTTATCGATCCAATTCAACTAGCGAATTTGAATAAGAGTATAGATGATGAGGAAGATTATGACGAAGAAGGTTAG 843 43.89 MKKKLDTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTMNSLHLKQCIQTFNVFDFLRDVVGKVPDLGASDAAEDRCISKRRKVEDEDGGNDSEEESKRSKTTEAGHNISGRGRGRGRGRGRGRSSRHSEKDTAIHSDNFEEDLEIPSHPGNNLEKTMPDNGVAEARMENDNIPIDKAVEPSVRNFDLNVNLDEDGDSTSTPVAASTGSPVKPLTDSKHDEYPGWSVAEMEKMVIDPIQLANLNKSIDDEEDYDEEG 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8017190 8021054 + Cp4.1LG16g08380.1 Cpe16g00834 483209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00834 280 MobiDBLite consensus disorder prediction 103 128 - -
Cpe16g00834 280 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Cpe16g00834 280 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 279 - -
Cpe16g00834 280 MobiDBLite consensus disorder prediction 216 236 - -
Cpe16g00834 280 SUPERFAMILY Histone-fold 3 89 IPR009072 GO:0046982
Cpe16g00834 280 Gene3D Histone, subunit A 1 72 IPR009072 GO:0046982
Cpe16g00834 280 MobiDBLite consensus disorder prediction 103 182 - -
Cpe16g00834 280 MobiDBLite consensus disorder prediction 216 243 - -
Cpe16g00834 280 MobiDBLite consensus disorder prediction 148 172 - -
Cpe16g00834 280 PANTHER HISTONE SUPERFAMILY PROTEIN 1 279 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00834 K21752 DRAP1, NC2-alpha; Dr1-associated corepressor - csv:101204606 464.151
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00475 Cpe-Chr9:3124197 Cpe16g00834 Cpe-Chr16:8017190 5.55E-55 dispersed
Cpe16g00834 Cpe-Chr16:8017190 Cpe18g00070 Cpe-Chr18:1728604 5.47E-11 dispersed
Cpe16g00834 Cpe-Chr16:8017190 Cpe01g01183 Cpe-Chr1:7036369 4.48E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g931 . . . . Bpe01g00338 . . . . . . . . . . . . . . . . . . . Cla02g02187 . Cec02g2370 Cco02g2412 . . Cre02g2564 . . . . . Csa06g02481 . Cme05g00230 . Blo14g00304 . . . . . Bma11g00317 . . Cmo20g00152 . Cma20g00136 . Car20g00114 Cpe16g00834 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe18g00908 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.0 5.3e-88 321.2
Cpe04g01618 . 102 286 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.5 3.4e-87 318.5
Cpe04g00147 . 100 268 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 7.2e-53 204.5
Cpe18g00070 . 111 278 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.7 7.2e-53 204.5
Cpe15g00258 . 70 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 66.4 1.6e-52 203.4
Cpe04g00402 . 140 283 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.1 8.0e-52 201.1
Cpe04g00147 . 19 278 CCAAT-HAP5 Transcription Factor Family AT1G08970 54.8 1.4e-53 206.8
Cpe18g00070 . 38 278 CCAAT-HAP5 Transcription Factor Family AT1G08970 54.1 1.2e-52 203.8
Cpe04g00402 . 86 238 CCAAT-HAP5 Transcription Factor Family AT1G08970 72.1 2.1e-49 193.0
Cpe15g00258 . 30 167 CCAAT-HAP5 Transcription Factor Family AT1G08970 73.8 2.8e-49 192.6
Cpe18g00908 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 8.7e-43 171.0
Cpe04g01618 . 102 200 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.5e-42 169.5
Cpe04g00147 . 79 268 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.4 1.9e-60 229.6
Cpe18g00070 . 60 278 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.9 9.0e-58 220.7
Cpe15g00258 . 30 211 CCAAT-HAP5 Transcription Factor Family AT1G54830 62.3 9.6e-52 200.7
Cpe18g00908 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.1e-51 199.5
Cpe04g00402 . 86 282 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 2.8e-51 199.1
Cpe04g01618 . 102 260 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 1.1e-50 197.2
Cpe18g00908 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.9 5.6e-38 154.8
Cpe04g01618 . 102 262 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.0 9.6e-38 154.1
Cpe18g00908 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 2.5e-80 295.8
Cpe04g01618 . 102 286 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 9.6e-80 293.9
Cpe04g00147 . 100 268 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 8.0e-50 194.5
Cpe15g00258 . 70 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.3 2.3e-49 193.0
Cpe04g00402 . 140 292 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.8 3.9e-49 192.2
Cpe18g00070 . 111 278 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 1.5e-48 190.3
Cpe04g00402 . 104 271 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 1.2e-64 243.4
Cpe15g00258 . 33 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 76.9 5.5e-62 234.6
Cpe04g00147 . 100 236 CCAAT-HAP5 Transcription Factor Family AT1G56170 72.7 9.8e-51 197.2
Cpe18g00070 . 85 242 CCAAT-HAP5 Transcription Factor Family AT1G56170 70.6 3.7e-50 195.3
Cpe04g01618 . 102 225 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.9e-50 194.9
Cpe18g00908 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.9e-50 194.9
Cpe01g01183 CCT,ECH 19 298 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.5 8.4e-59 224.6
Cpe16g00834 . 1 280 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.3 6.2e-54 208.4
Cpe11g00366 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.2 6.2e-38 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014052 0 0 0 1 1 0 1 1 1 0 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50751 PF00808 CBFD_NFYB_HMF 1.40E-18 CL0012 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00834 Cpe_Chr16 FPKM 38.464035 44.715115 38.510262 39.905308 16.574118 15.921626 16.519474 72.139183 72.403336 71.095879