Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00838 TTTGCACCCATCTCCTGTGCTACAACAGAGGTTCCTGCAGAAAAGTGGCGATTAGAAGCTTGGTTTTCGGAACATGTGAAGCCCTTAGCGGCGCGCAAGGCGGATCTTGATCCAGCCCTTGTGGCAGCTGAAGAAAGCTCCACCGTCGTGAAAGTAAGGGCCGACGGAAGTGGAGATTTCAAGACTATCACCAAAGCCATTGCCAGCGTTCCTGTTGGTAACACCAAGCGCGTCGTGATTTGGATTGGAGGAGGGGTTTATAAAGAGAAGGTTAGGATCGATAGGAATAAGCCATTTATTACCCTTTATGGCTCTCCTAACAATATGCCAAACTTGACATTTGATGGAGACGCTACAAAATACGGCACCATTTACAGCCCAACTTTGATAGTTGAGGCTGATTATTTCGTTGCTGCAAATCTGGTGATTGAGAATTCATCTCCAAGGCCGGAAGGGATAAAAGGAGGTCAGGCATTAGCGGCAAGAATGAGAGGTAATAAAGCTGCAATTTACAATTGCAAGTTCATAGGATTTCAAGACACCCTGTGCGACGATGACGGGTTGCATTTTTACAAAGATTGCTTCGTCCAGGGCACAGTGGACTTCATCTTCGGGAAGGGAACGTCCCTTCATTTGAACACTCAGATGAACGTGGTGGGAATCGGGGGATTGGGAGTGGTGGCAGCGCATTCAAGGGAAAAGGAAGATGACCCGAGTGGGTATGTGTTCGCGCATTGCAGCATCACAGGAACAGGGGGGAAAAACACTTATCTGGGAAGATCATGGAGGCCATGGTCTAGAGTTGTGTTCGCCTACACCAGCATTGCGGACATCCTTCATCCTGAAGGCTGGGACGACATGAACAACCCCGCTTATGACCATACGGTTTTCTACGGAGAATACAAGTGTTCGGGGCTGGGAGCGGTATCCACCGGCCGTGCCAAATTCGGGAAGCAGCTCACTAAAGCACAAGTGAAACCCTTCATCAACCTTGATTTCGTGCACGCCCACAAGTGGTTGCTTCCTCCTCCCAAACTA 1038 49.13 FAPISCATTEVPAEKWRLEAWFSEHVKPLAARKADLDPALVAAEESSTVVKVRADGSGDFKTITKAIASVPVGNTKRVVIWIGGGVYKEKVRIDRNKPFITLYGSPNNMPNLTFDGDATKYGTIYSPTLIVEADYFVAANLVIENSSPRPEGIKGGQALAARMRGNKAAIYNCKFIGFQDTLCDDDGLHFYKDCFVQGTVDFIFGKGTSLHLNTQMNVVGIGGLGVVAAHSREKEDDPSGYVFAHCSITGTGGKNTYLGRSWRPWSRVVFAYTSIADILHPEGWDDMNNPAYDHTVFYGEYKCSGLGAVSTGRAKFGKQLTKAQVKPFINLDFVHAHKWLLPPPKL 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8054835 8055950 + Cp4.1LG16g08430.1 Cpe16g00838 483213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00838 346 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 15 341 - -
Cpe16g00838 346 PANTHER PECTINESTERASE 63-RELATED 15 341 - -
Cpe16g00838 346 ProSitePatterns Pectinesterase signature 2. 196 205 IPR033131 -
Cpe16g00838 346 Gene3D - 43 342 IPR012334 -
Cpe16g00838 346 Pfam Pectinesterase 50 335 IPR000070 GO:0030599|GO:0042545
Cpe16g00838 346 SUPERFAMILY Pectin lyase-like 46 340 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00838 Cpe-Chr16:8054835 Cpe16g00840 Cpe-Chr16:8058734 6.49E-168 dispersed
Cpe16g00836 Cpe-Chr16:8041521 Cpe16g00838 Cpe-Chr16:8054835 4.91E-168 proximal
Cpe16g00838 Cpe-Chr16:8054835 Cpe16g00839 Cpe-Chr16:8056789 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00838 K01051 - csv:101205095 528.094