Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00839 ATGGAATATTGCATTAATGCCGTCGCTCTCACCAGATTGGTGATCTTCCTAGCCGCTTTTGCAGCCATCTTCGGTGCTACACCACCGGTTTCCGAAGAACCCAACTGCGGTGCTGCATCACCGGCTTCCGCAGAAGGCACCTGCTCTGCTACACCGGCTTCCGCAGAAGGCCCCTCCGCTGCTACTTCACCGGATCCCCCCGCAGGCGCCACCTCCGCCTCTCCTTCATCAGAGGTTCCTGCAGAGAAATCCCAGTTAGAAGCTTGGTTTTCCGGACATGTGAAGCCCTTAGCCGACCGCAAGGCCGAGCTTGATCCAGCCCTTGTGGCCGCTGAAGAAAACGCCACCGTGGTCAAAGTAAGGGCCGACGGAAGTGGAGATTTCAAGACTGTCACCGAAGCCATCGCCAGCGTTCCAGCCGGTAACACCCACCGCGTCGTGATTTGGATTGGAGAAGGAGTTTACAAGGAGAAGCTTACGATTGAGAGAAATAAGCCATTCATTACTCTTTACGGTTCCCCCAAGAATATGCCAAAATTGACATTTGATGGAGACTCCAAAAAATACGGCACCGTGTACAGTGGAACTTTGACCATGGAGGCTGATTATTTTGTTGCTGCCAATCTGGTGATCGAGAACACTTCTCCAAGACCGGATGCGAGAAAAGGAGGTCCGGCATTGGCGGCGAGAATCAGAGGGAATAAAGCCGCAATTTACAACTGCAAATTCATAGGGTTTCAAGACACCCTGTGCGACGACGATGGGATGCATGTGTACAAGGATAGCTTCATCGAAGGCACCGTGGACTTCATCTTCGGGAAGGCAACGTCCCTGTATTTGAACAGTCAGCTGAACGTGGTGGGAGAAGGGGGATTGGGAGTGATTGCAGCGCATTCAAGAGAAAAGGAAGACGACCCGAGTGGTTATGTGTTTGCGCATTGCAGCGTTACAGGCACTGGCGGGCCGAACACTTATTTGGCAAGATCCTGGAGGCCTTGGTCCAGAGTTGTGTTTGCCTACACCACCATTGCCGACGTCCTTCATCCTGAAGGCTGGGACGACATGAACCACCCTGATTTCGACAAGACGGTTTTCTTCGGAGAATATAAGAGTTCGGGGCCGGGAGCGGAGACGAGCAGCCGCATAAAATTCAGCAAACAGCTGAGTGATGCAGAAGTGAAACCGTTCCTCAGCCTTGATTACGTGCAGGCCCAAAAGTGGCTGCTTCCTCCTCCCAAGCTGTAG 1245 52.85 MEYCINAVALTRLVIFLAAFAAIFGATPPVSEEPNCGAASPASAEGTCSATPASAEGPSAATSPDPPAGATSASPSSEVPAEKSQLEAWFSGHVKPLADRKAELDPALVAAEENATVVKVRADGSGDFKTVTEAIASVPAGNTHRVVIWIGEGVYKEKLTIERNKPFITLYGSPKNMPKLTFDGDSKKYGTVYSGTLTMEADYFVAANLVIENTSPRPDARKGGPALAARIRGNKAAIYNCKFIGFQDTLCDDDGMHVYKDSFIEGTVDFIFGKATSLYLNSQLNVVGEGGLGVIAAHSREKEDDPSGYVFAHCSVTGTGGPNTYLARSWRPWSRVVFAYTTIADVLHPEGWDDMNHPDFDKTVFFGEYKSSGPGAETSSRIKFSKQLSDAEVKPFLSLDYVQAQKWLLPPPKL 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8056789 8058507 - Cp4.1LG16g08440.1 Cpe16g00839 483214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00839 414 ProSitePatterns Pectinesterase signature 2. 264 273 IPR033131 -
Cpe16g00839 414 MobiDBLite consensus disorder prediction 42 58 - -
Cpe16g00839 414 MobiDBLite consensus disorder prediction 31 82 - -
Cpe16g00839 414 PANTHER PECTINESTERASE 63-RELATED 83 409 - -
Cpe16g00839 414 MobiDBLite consensus disorder prediction 65 81 - -
Cpe16g00839 414 Pfam Pectinesterase 118 403 IPR000070 GO:0030599|GO:0042545
Cpe16g00839 414 SUPERFAMILY Pectin lyase-like 115 408 IPR011050 -
Cpe16g00839 414 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 83 409 - -
Cpe16g00839 414 Gene3D - 112 410 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00064 Cpe-Chr16:1270114 Cpe16g00839 Cpe-Chr16:8056789 0 dispersed
Cpe16g00839 Cpe-Chr16:8056789 Cpe18g00290 Cpe-Chr18:4447301 1.32E-123 dispersed
Cpe16g00838 Cpe-Chr16:8054835 Cpe16g00839 Cpe-Chr16:8056789 0 tandem
Cpe16g00839 Cpe-Chr16:8056789 Cpe16g00840 Cpe-Chr16:8058734 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00839 K01051 - csv:101205095 524.628