Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00840 ATGAGGAAAGGCTCCACCGTCGTGAAAGTGAGGGCCGACGGAAGCGGAGACTTCAAGACTGTCACCGAAGCCATCGCCAGCGTTCCAGCCGGTAACACCAAACGCGTCGTGATTTGGATAGGGGAAGGAGTTTATAAGGAGAAGCTTACGATCGAGAGAAATCAGCCCTTCATTACCCTTTACGGTTCCCCTAAGAATATGCCAAAATTGACATTCGATGGAGATTCCAAAAAATACGGCACCGTGTACAGTGGAACTTTGACCGTCGAGGCTGAGTATTTTGTTGCTGCCAATCTCGTGATCGAGAACACTTCTCCAAGACCGGATGCGAGAAAAGGAGGTCCGGCACTGGCGGCGAGAATCAGAGGGAATAAAGCCGCAATTTACAATTGCAAATTCCTAGGGTTCCAAGACACCCTGTGCGACGACGACGGGATGCATGTGTACAAGGATTGCATCATTGAAGGCACTGTGGACTTCATCTTCGGGAAGGCAACGTCCCTGTATTTGAACAGTCAGCTGAATGTGCTGGGAGAAGGGGGATTGGGAGTGATTGCAGCGCATTCAAGAGAAAAGGAAGACGACCCCAGTGGGTATGTGTTTGCGCATTGCAGCGTTACAGGCACTGGCGGGCCGAACACTTATTTGGCAAGATCCTGGAGGCCTTGGTCCAGAGTTGTGTTTGCCTACACCACCATTGCCGACATCCTTCATCCTGAAGGCTGGGACGACATGAACAACCCCGCTTTTGACAAGACGGTTTTCTTCGGAGAATTTAAGTGTTCGGGGCCGGGAGCGGAGACGAGCAAGCGTGTAAAATTCAGCAAACAGCTGAGTGAAGCACAAGCGAAACCCTTCATCAACCTTGATTACGTGCAGGCCCAAAATATCCACAATGCTGAGGCTTTAGCTCAAATAAATGCTCTGCTGCCTTACACCCTAGTTCAACGTTTCCGTAAATTCGACAAGCACCAAGTAGAGCTCCCCAAATATTTGAATCGGGCGCTATCGGTAGTCGCCGAATCAGCTCTGCTGCCTCTTCTACGAAACCAGCACGGCCGAGTAGATCAACCAGACATGTATAGTGCATTTCGGTTTGCACAAGCTGATATGACCCCCATAAAGGAAACGACATCAGGCTTTTTACCAAGCAGCCTCATTTCTGAGAACAAATTCAGAGACTCCAAGCAATCGTTTGTTTCAGAATATCCTCATCAGCAGCGTATTGCCAACATAGACATCAGAATCAAAACCCAACTTAAACACAACCCCATGAACCTCCATACCTTTGCAAATATCAAGCGAATCAGAACATATCTTGAGAACAAAAGGAAATGTATGGTCATCGAGTTGAACACCGAGTCGAACCATCCTGTTGTACGTCTGCAACCCATCAAGCGTCCCATTCCACTTAATATCTGGACCTTGATAAAGGGAGGGGAGTTTAGAGTAATTAGAGGGGAAATGAAGGAAGGCTCCACCGTCGTGAAAGTGAGGGCCGACGGAAGCGGAGACTTCAAGACTGTCACCGAAGCCATCGCCAGCGTTCCAGCCGGTAACACCAAACGCGTCGTGATTTGGATTGGGGAAGGAGTTTATAAGGAGAAGCTTACGATCGAGAGAAATCAGCCCTTCATTACCCTTTACGGTTCCCCTAAGAATATGCCGAAATTGACATTTGATGGAGATGCCAAAAAATACGGTACCGTTTACAGTGGAACTTTGACCGTGGAGGCTGATTATTTTGTTGCTGCCAATCTGGTGCTCGAGAACACTTCTCCAAGACCGCATGCCGGAAAAGGAGGTCCGGCATTGGCAGCGAGAATCAGAGGGAATAAAGCCGCAGTTTACAATTGCAAATTCATAGGGTTCCAAGACACCCTGTGCGACGACGACGGGCTGCATGTGTACAAGGATTGCTTCATTGAAGGCACCGTGGACTTCATCTTCGGGAAGGCAACGGCCCTGTATTTGAACAGTCAGCTGAATGTGGTGGGAGTCGGGGGATTGGGAGTGATTGCAGCGCATTCAAGAGAAAAGGAAGACGACCCCAGTGGATATGTGTTTGCGCATTGCAGCATTACAGGCACTGGCGGGCCGAACACTTATTTGGGAAGATCTTGGAGGCCCTGGTCCAGAGTTGTGTTTGCCTACACCACCATTGCCGACATCCTTCATCCTGAAGGCTGGGACGACATGAACAACCCCGCTTTTGACAAGACGGTTTTCTTTGGAGAATACAAGTGTTCGGGGCCGGGAGCGGAGACGAGCAAGCGTATAAAATTCAGCAGACAGCTGAGTGAAGCACAAGCAAAACCCTTCATCAACCTTGATTACGGAGAGTGGCAGTATTCGATCGAGTGGCAGTATTCGAGTGGCAGTATTCTCACATACACCAAATACCTCTCCGCAACCGCAATCGATCGGGCCGAGCTTGATCCCGCCCTTGTGGCCGCTGAAGAAGGCTCCACCGTCGTGAAAGTGAGGGCCGACGGAAGCGGAGACTTCAAGACTGTCACCGAAGCCATCGCCAGCGTTCCAGCCGGTAACACCAAACGCGTCGTGATTTGGATAGGGGAAGGAGTTTATAAGGAGAAGCTTACGATCGAGAGAAATCAGCCCTTCATTACCCTTTACGGTTCCCCTAAGAATATGCCAAAATTGACATTCGATGGAGATTCCAAAAAATACGGCACCGTGTACAGTGGAACTTTGACCGTCGAGGCTGAGTATTTTGTTGCTGCCAATCTCGTGATCGAGAACACTTCTCCAAGACCGGATGCGAGAAAAGGAGGTCCGGCACTGGCGGCGAGAATCAGAGGGAATAAAGCCGCAATTTACAATTGCAAATTCCTAGGGTTCCAAGACACCCTGTGCGACGACGACGGGATGCATGTGTACAAGGATTGCATCATTGAAGGCACTGTGGACTTCATCTTCGGGAAGGCAACGTCCCTGTATTTGAACAGTCAGCTGAATGTGCTGGGAGAAGGGGGATTGGGAGTGATTGCAGCGCATTCAAGAGAAAAGGAAGACGACCCCAGTGGGTATGTGTTTGCGCATTGCAGCGTTACAGGCACTGGCGGGCCGAACACTTATTTGGCAAGATCCTGGAGGCCTTGGTCCAGAGTTGTGTTTGCCTACACCACCATTGCCGACATCCTTCATCCTGAAGGCTGGGACGACATGAACAACCCCGCTTTTGACAAGACGGTTTTCTTCGGAGAATTTAAGTGTTCGGGGCCGGGAGCGGAGACGAGCAAGCGTGTAAAATTCAGCAAACAGCTGAGTGAAGCACAAGCGAAACCCTTCATCAACCTTGATTACGTGCAGGCCCAAAAGTGGTTGCTTCCTCCTCCCAAACTATAG 3369 49.96 MRKGSTVVKVRADGSGDFKTVTEAIASVPAGNTKRVVIWIGEGVYKEKLTIERNQPFITLYGSPKNMPKLTFDGDSKKYGTVYSGTLTVEAEYFVAANLVIENTSPRPDARKGGPALAARIRGNKAAIYNCKFLGFQDTLCDDDGMHVYKDCIIEGTVDFIFGKATSLYLNSQLNVLGEGGLGVIAAHSREKEDDPSGYVFAHCSVTGTGGPNTYLARSWRPWSRVVFAYTTIADILHPEGWDDMNNPAFDKTVFFGEFKCSGPGAETSKRVKFSKQLSEAQAKPFINLDYVQAQNIHNAEALAQINALLPYTLVQRFRKFDKHQVELPKYLNRALSVVAESALLPLLRNQHGRVDQPDMYSAFRFAQADMTPIKETTSGFLPSSLISENKFRDSKQSFVSEYPHQQRIANIDIRIKTQLKHNPMNLHTFANIKRIRTYLENKRKCMVIELNTESNHPVVRLQPIKRPIPLNIWTLIKGGEFRVIRGEMKEGSTVVKVRADGSGDFKTVTEAIASVPAGNTKRVVIWIGEGVYKEKLTIERNQPFITLYGSPKNMPKLTFDGDAKKYGTVYSGTLTVEADYFVAANLVLENTSPRPHAGKGGPALAARIRGNKAAVYNCKFIGFQDTLCDDDGLHVYKDCFIEGTVDFIFGKATALYLNSQLNVVGVGGLGVIAAHSREKEDDPSGYVFAHCSITGTGGPNTYLGRSWRPWSRVVFAYTTIADILHPEGWDDMNNPAFDKTVFFGEYKCSGPGAETSKRIKFSRQLSEAQAKPFINLDYGEWQYSIEWQYSSGSILTYTKYLSATAIDRAELDPALVAAEEGSTVVKVRADGSGDFKTVTEAIASVPAGNTKRVVIWIGEGVYKEKLTIERNQPFITLYGSPKNMPKLTFDGDSKKYGTVYSGTLTVEAEYFVAANLVIENTSPRPDARKGGPALAARIRGNKAAIYNCKFLGFQDTLCDDDGMHVYKDCIIEGTVDFIFGKATSLYLNSQLNVLGEGGLGVIAAHSREKEDDPSGYVFAHCSVTGTGGPNTYLARSWRPWSRVVFAYTTIADILHPEGWDDMNNPAFDKTVFFGEFKCSGPGAETSKRVKFSKQLSEAQAKPFINLDYVQAQKWLLPPPKL 1122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8058734 8068711 + Cp4.1LG16g08420.1 Cpe16g00840 483215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00840 1122 Gene3D - 3 307 IPR012334 -
Cpe16g00840 1122 Gene3D - 491 793 IPR012334 -
Cpe16g00840 1122 Gene3D - 821 1118 IPR012334 -
Cpe16g00840 1122 PANTHER PECTINESTERASE 63-RELATED 493 779 - -
Cpe16g00840 1122 PANTHER PECTINESTERASE 63-RELATED 823 1117 - -
Cpe16g00840 1122 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 493 779 - -
Cpe16g00840 1122 PANTHER PECTINESTERASE 63-RELATED 7 296 - -
Cpe16g00840 1122 ProSitePatterns Pectinesterase signature 2. 972 981 IPR033131 -
Cpe16g00840 1122 ProSitePatterns Pectinesterase signature 2. 154 163 IPR033131 -
Cpe16g00840 1122 SUPERFAMILY Pectin lyase-like 494 785 IPR011050 -
Cpe16g00840 1122 ProSitePatterns Pectinesterase signature 2. 642 651 IPR033131 -
Cpe16g00840 1122 SUPERFAMILY Pectin lyase-like 6 295 IPR011050 -
Cpe16g00840 1122 SUPERFAMILY Pectin lyase-like 824 1116 IPR011050 -
Cpe16g00840 1122 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 823 1117 - -
Cpe16g00840 1122 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 7 296 - -
Cpe16g00840 1122 Pfam Pectinesterase 826 1111 IPR000070 GO:0030599|GO:0042545
Cpe16g00840 1122 Pfam Pectinesterase 8 293 IPR000070 GO:0030599|GO:0042545
Cpe16g00840 1122 Pfam Pectinesterase 496 774 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01530 Cpe-Chr2:13015590 Cpe16g00840 Cpe-Chr16:8058734 5.50E-34 dispersed
Cpe16g00836 Cpe-Chr16:8041521 Cpe16g00840 Cpe-Chr16:8058734 0 dispersed
Cpe16g00838 Cpe-Chr16:8054835 Cpe16g00840 Cpe-Chr16:8058734 6.49E-168 dispersed
Cpe16g00840 Cpe-Chr16:8058734 Cpe18g00290 Cpe-Chr18:4447301 1.18E-99 dispersed
Cpe16g00839 Cpe-Chr16:8056789 Cpe16g00840 Cpe-Chr16:8058734 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00840 K01051 - csv:101205095 494.197