Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00842 ATGAAGGGTATATTAGAAAATGGACCAACAGAGTATATAGCTGGAAGCACAAGAGAAGAAGCCTGGCTTTGTTCACTGGACTACATATATCCCTCCTGCACACCCAAAATATCTCTCAGTGGTTCTAGTTCGCTTCCAATTCACGAATCCCTAGAAGAATTGATGGAACAGAGGAAGTACAGAGCCGATCTTCTTTCACCTGCCTTCCTTGTCCTCCTCCTTTTCCTCTTCCTTTCCGGTCGATCCGCCGTTCACGCCTACAAGAACTACACCGTCGGAGACTCCCTCGGCTGGTTCGACAAATTGGAGAAACCTGCCGTTGATTATCAAAAATGGACAGTCGGCAAGAACTTCAGCCTCGGCGATTTTCTAATTTTTAACACTGACAACAATCACTCGATTGTGCTTACGTATAATTTCACCACATACAAGCTATGCGACTACGACGACGCATCGGAACATGACACGACAGAATGGTCCGCTGCTGACCCGTCGGCGACCACTCCATACGCCGTGACGGTGGCCGTCCCACTGCTAAAAGAAGGGACCAACTATTTCTTCTCCGGCCACTACGACGGAGAGCAATGTCAAAATGGGCAACAATTCAAAATAAACGTCACTCATGGACAGGGCCTCCCGAAGAGCATGAGAGATTCTTCCGACGAAGCTCCGGCTCCTGTAGTTCCCGACACCGGCGACCAAACCGAATCTGCTCCCGACACCATTGTCCCTTCCAACTTCGACAATCCCCAAAACGACGTCGCTGATAGCGACAAGGAGGTTTCGGGCTCCGTTTCGCTATCGCTTCACTTCAAGTTTAATGAGTTTTTCTTCGTGTTAGTTGGTATTGCCTCTGCCTGCATTTTTCTCTGTACTGAATGA 882 48.75 MKGILENGPTEYIAGSTREEAWLCSLDYIYPSCTPKISLSGSSSLPIHESLEELMEQRKYRADLLSPAFLVLLLFLFLSGRSAVHAYKNYTVGDSLGWFDKLEKPAVDYQKWTVGKNFSLGDFLIFNTDNNHSIVLTYNFTTYKLCDYDDASEHDTTEWSAADPSATTPYAVTVAVPLLKEGTNYFFSGHYDGEQCQNGQQFKINVTHGQGLPKSMRDSSDEAPAPVVPDTGDQTESAPDTIVPSNFDNPQNDVADSDKEVSGSVSLSLHFKFNEFFFVLVGIASACIFLCTE 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8072065 8074717 + Cp4.1LG16g08350.1 Cpe16g00842 483217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00842 293 MobiDBLite consensus disorder prediction 234 257 - -
Cpe16g00842 293 CDD Phytocyanin 88 206 - -
Cpe16g00842 293 PANTHER BLUE COPPER PROTEIN 66 275 IPR039391 GO:0009055
Cpe16g00842 293 Gene3D - 87 211 IPR008972 -
Cpe16g00842 293 PANTHER BNAA08G26900D PROTEIN 66 275 - -
Cpe16g00842 293 SUPERFAMILY Cupredoxins 88 206 IPR008972 -
Cpe16g00842 293 Pfam Plastocyanin-like domain 98 200 IPR003245 GO:0009055
Cpe16g00842 293 MobiDBLite consensus disorder prediction 211 257 - -
Cpe16g00842 293 ProSiteProfiles Phytocyanin domain profile. 88 208 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00842 - - - cpep:111776932 585.874
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00463 Cpe16g00842 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00020 Cpe-Chr12:101142 Cpe16g00842 Cpe-Chr16:8072065 3.43E-36 dispersed
Cpe16g00842 Cpe-Chr16:8072065 Cpe17g00320 Cpe-Chr17:2169567 2.18E-30 dispersed
Cpe16g00842 Cpe-Chr16:8072065 Cpe05g00463 Cpe-Chr5:2699740 2.37E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g956 . . . . . . . . . . . . . . . Cpe05g00463 . . . . . . . . Cla02g02197 Cam02g2342 Cec02g2381 Cco02g2423 Clacu02g2315 Cmu02g2248 Cre02g2575 . Cone5ag1429 . . . Csa06g02492 Chy05g00185 Cme05g00219 . . . . . . . . . . Cmo20g00135 . Cma20g00126 . Car20g00109 Cpe16g00842 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe09g01150 . 12 146 Phytocyanin Superfamily AT1G48940 54.0 1.9e-37 152.9
Cpe20g00102 . 12 137 Phytocyanin Superfamily AT1G48940 57.0 2.5e-37 152.5
Cpe04g00182 . 24 126 Phytocyanin Superfamily AT3G01070 67.3 2.1e-38 156.0
Cpe04g00182 . 28 151 Phytocyanin Superfamily AT5G15350 58.9 2.2e-43 172.6
Cpe07g00325 . 2 168 Phytocyanin Superfamily AT4G31840 52.1 3.3e-42 168.7
Cpe20g00102 . 8 135 Phytocyanin Superfamily AT3G18590 57.7 6.9e-38 154.5
Cpe20g00102 . 8 135 Phytocyanin Superfamily AT3G18590 57.7 6.9e-38 154.5
Cpe09g01150 . 12 146 Phytocyanin Superfamily AT1G48940 54.0 1.9e-37 152.9
Cpe20g00102 . 12 137 Phytocyanin Superfamily AT1G48940 57.0 2.5e-37 152.5
Cpe07g00325 . 1 164 Phytocyanin Superfamily AT5G25090 53.4 9.8e-37 150.6
Cpe07g00325 . 2 168 Phytocyanin Superfamily AT4G31840 52.1 3.3e-42 168.7
Cpe04g00182 . 24 126 Phytocyanin Superfamily AT3G01070 67.3 2.1e-38 156.0
Cpe04g00182 . 28 151 Phytocyanin Superfamily AT5G15350 58.9 2.2e-43 172.6
Cpe16g00842 CCT 83 283 Phytocyanin Superfamily AT1G08500 59.4 5.7e-63 238.0
Cpe18g00130 . 32 173 Phytocyanin Superfamily AT2G27035 54.2 4.0e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013663 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00842 Cpe_Chr16 FPKM 0.0 0.0 0.0 0.412659 1.352638 1.873395 1.679822 0.0 0.0 0.0