Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00858 ATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCAGATGCCGTTCAAGACCTGAAAGTTTGCGACCAGGTGGAAATGTGGAAGAAGTTAGAAATTCAAGGGACCGGGCATGGGAGCCATGATGGCGCTTGTGCAATTTGCTTAAATAAAATATCCCTGCCAGAAACTGCTTTAGTTAGAGGTTGCGAACACGCCTATTGTACGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCCACCTGTCCGCAATGTAAACATCCATTCGAGTTCCTGATTGTGCATCGTTCTCTTGACGGGAGCATCCATGACTATATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCGTGGTATGAGCCACTGATCGTTAAAGATCGGGAGGAAACCTATGATGATCCTGAGGAGTACTATCCTTATGAGGATCAGGACGAAGAGCTTGAGGAAGCTTACCTGGGTGCTTCGCCAAGTCTCCGAATCGGCAATCGGAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTTTAAGGCCAGAGTTTTCTGGAGCTAGCTCATCACGGGAGCCTCCGACAAAAGATGCTTCCAAGGATAAAACAGGTCGACGAGCTAAAAGGGCATTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAGCATCAAGAACATTTAGCTAGGTTTGGCCTGAATTAA 723 48.13 MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETALVRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQEARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8157994 8160563 - Cp4.1LG16g08580.1 Cpe16g00858 483233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00858 240 SMART ring_2 46 88 IPR001841 -
Cpe16g00858 240 ProSiteProfiles Zinc finger RING-type profile. 46 89 IPR001841 -
Cpe16g00858 240 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 239 - -
Cpe16g00858 240 SUPERFAMILY RING/U-box 45 96 - -
Cpe16g00858 240 Pfam Ring finger domain 45 89 IPR001841 -
Cpe16g00858 240 MobiDBLite consensus disorder prediction 200 231 - -
Cpe16g00858 240 MobiDBLite consensus disorder prediction 185 240 - -
Cpe16g00858 240 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Cpe16g00858 240 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 239 - -
Cpe16g00858 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 112 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00476 Cpe16g00858 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00858 Cpe-Chr16:8157994 Cpe05g00476 Cpe-Chr5:2780316 7.37E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00858 - - mcha:111020607 379.407