Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe16g00858 | ATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCAGATGCCGTTCAAGACCTGAAAGTTTGCGACCAGGTGGAAATGTGGAAGAAGTTAGAAATTCAAGGGACCGGGCATGGGAGCCATGATGGCGCTTGTGCAATTTGCTTAAATAAAATATCCCTGCCAGAAACTGCTTTAGTTAGAGGTTGCGAACACGCCTATTGTACGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCCACCTGTCCGCAATGTAAACATCCATTCGAGTTCCTGATTGTGCATCGTTCTCTTGACGGGAGCATCCATGACTATATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCGTGGTATGAGCCACTGATCGTTAAAGATCGGGAGGAAACCTATGATGATCCTGAGGAGTACTATCCTTATGAGGATCAGGACGAAGAGCTTGAGGAAGCTTACCTGGGTGCTTCGCCAAGTCTCCGAATCGGCAATCGGAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTTTAAGGCCAGAGTTTTCTGGAGCTAGCTCATCACGGGAGCCTCCGACAAAAGATGCTTCCAAGGATAAAACAGGTCGACGAGCTAAAAGGGCATTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAGCATCAAGAACATTTAGCTAGGTTTGGCCTGAATTAA | 723 | 48.13 | MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETALVRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQEARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 8157994 | 8160563 | - | Cp4.1LG16g08580.1 | Cpe16g00858 | 483233 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe16g00858 | 240 | SMART | ring_2 | 46 | 88 | IPR001841 | - | |
Cpe16g00858 | 240 | ProSiteProfiles | Zinc finger RING-type profile. | 46 | 89 | IPR001841 | - | |
Cpe16g00858 | 240 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 11 | 239 | - | - | |
Cpe16g00858 | 240 | SUPERFAMILY | RING/U-box | 45 | 96 | - | - | |
Cpe16g00858 | 240 | Pfam | Ring finger domain | 45 | 89 | IPR001841 | - | |
Cpe16g00858 | 240 | MobiDBLite | consensus disorder prediction | 200 | 231 | - | - | |
Cpe16g00858 | 240 | MobiDBLite | consensus disorder prediction | 185 | 240 | - | - | |
Cpe16g00858 | 240 | ProSitePatterns | Zinc finger RING-type signature. | 64 | 73 | IPR017907 | - | |
Cpe16g00858 | 240 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 11 | 239 | - | - | |
Cpe16g00858 | 240 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 27 | 112 | IPR013083 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe05g00476 | Cpe16g00858 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe16g00858 | Cpe-Chr16:8157994 | Cpe05g00476 | Cpe-Chr5:2780316 | 7.37E-141 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe16g00858 | - | - | mcha:111020607 | 379.407 |