Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00860 ATGAACGGCAGAGTCTCCCATTTCTTCTCTCTCTCTCTCTCTCCCATAAACTCCACTTTTTGTTTGTGCTCCACCAAAAAGCCAAAGTTTGTGGCAGTAATCAGCGAGCAGCGGAAGAGTAAGCAGAAGCAGAAGCAGAAGCAGAAGCGGCACAGCAGAAGCAGCAGCATTTCATCCGTTGTGGCTACTACAAGGAGGTTACCTTCTGATTCCGGTGCTTTTGCTGACTGGGCGGCTCCGTCTTCCTCCGCCGGCCGCGCTCCCCCTGATGACCTCTCTCTTGGCTTCAATGCCGCTCCTGCTGTCGCGCCACCTGCCGGACCCCCTGCCCCTTTGTGGTCCGCTGCGGCTGCCGCTCAGAGGTCTCTCAATTATGGCCTTGGATCGGAGATGGGAATGGTCGGGTTACGAGATGTGTATGTTGTCGCTCCGGCTGCCTCTTTTAATCCAAATCCTCACCATCACGACCCTAATCTCATCTCTGATGATCATTCCCTTGCCGCCTCTAACTCCGCCACTGCCCTCGGTGTCGGAGTAGGCGTCGGTGTTATTCCGCTTCTCACTGCTGGCCCCTGCCTCGGCGTTGAGGAGGATAATCTCTTGGGTAGTCGCAGTGGTAGCAGAGGCGGAGGGATTCAGCTATGGCAGCAGAATCAGCAATCGACGCAACATTATTTGAAGAAAACGCCGTCGTCTTCTCTCGACCATCACCTCCATAATGCCTCCGGTACGAACAACGACCTTATCGGAGGAGGAATCGGCGTCTTTGGAGGTTTAGCTTCGTCGTCCTCGGCGACGACCACGTGCCAGGACTGTGGGAACCAAGCGAAGAAAGATTGTAGTCGTGGACGCTGCAGAACTTGTTGTCGAAGCCGAGGGTTCGATTGCGCGACTCACGTGAAGAGCACGTGGGTTCCTGCAGCCCGCCGGAGAGAGCGACAGCTCATGGCCATCACCGGAACCGCCGCAGATGGCTCTTCAGGTTCCGCCTCCGGCACGAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCACACTTCCACATCTAACACCACACCTCCAGGAAGCATCGACACGAGCTCCAGTCATCAAGATGCAGGATTTAAAGAGGAATTACCAGGCCAAATACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGATGACGGCGAGGACGAGTACGCGTATCAAGCGGTCGTGAAGATCGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGATGGCTTTCCTAATGTATCGGAACTGCATTTGAGCGACGGCGGCGGTGGGAGCAGAAATAATCGGAATGGATCTTCTTCTGCTCCGTTTGTCGATCCATCGGATGTTTACAACGCGGCCGCCTCCGGCAATGGTGGTGCTCCAGGTTTTCTCGGTGGTTCAAATTATGGTAATCAAATCCGCTGA 1455 54.91 MNGRVSHFFSLSLSPINSTFCLCSTKKPKFVAVISEQRKSKQKQKQKQKRHSRSSSISSVVATTRRLPSDSGAFADWAAPSSSAGRAPPDDLSLGFNAAPAVAPPAGPPAPLWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAASNSATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGVEAGDGFPNVSELHLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAPGFLGGSNYGNQIR 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8171896 8174131 - Cp4.1LG16g08610.1 Cpe16g00860 483235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00860 484 MobiDBLite consensus disorder prediction 319 368 - -
Cpe16g00860 484 MobiDBLite consensus disorder prediction 431 454 - -
Cpe16g00860 484 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 268 310 IPR006510 -
Cpe16g00860 484 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 373 420 IPR006511 -
Cpe16g00860 484 MobiDBLite consensus disorder prediction 320 364 - -
Cpe16g00860 484 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 131 483 - -
Cpe16g00860 484 MobiDBLite consensus disorder prediction 437 454 - -
Cpe16g00860 484 MobiDBLite consensus disorder prediction 35 63 - -
Cpe16g00860 484 Pfam Domain of unknown function (DUF702) 266 421 - -
Cpe16g00860 484 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 131 483 IPR007818 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00477 Cpe16g00860 CCT
Cpe04g00890 Cpe16g00860 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00448 Cpe-Chr9:2889169 Cpe16g00860 Cpe-Chr16:8171896 1.74E-59 dispersed
Cpe16g00860 Cpe-Chr16:8171896 Cpe19g00837 Cpe-Chr19:6224497 7.83E-42 dispersed
Cpe16g00860 Cpe-Chr16:8171896 Cpe03g00357 Cpe-Chr3:1888372 1.27E-77 wgd
Cpe16g00860 Cpe-Chr16:8171896 Cpe04g00890 Cpe-Chr4:8146991 2.20E-68 wgd
Cpe16g00860 Cpe-Chr16:8171896 Cpe05g00477 Cpe-Chr5:2788710 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50752 PF05142 DUF702 2.50E-60 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00860 - - cpep:111777082 738.413