Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00877 ATGCAGTCAAAGCCTAGAAGTGTGAATCAACTAGAATCTGAACCACCAAATATGCAGCAGACTAGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGATACAATCATATCTCCCCGCCAGCAGCAGGAGGAAATTTGTCCAATTCAACATCACTGGAATGTCCTAATGGTGCCTCAGAATCTAATGACGGACCGTCAATGTCAAATGATGATTTGAATGAAGATGATGATGATGACACCACAAAAGATTCACATGCTGTAAGTTATGGGCAAGTACAGAACAACAGTCAGCATGCTGTTTCTGCTGCACCTACAGTGCATGGTGGATGTATCACACAACCTTCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCTATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGACATCAACCGGGTTATCCTCCCTTTCTTGGGATGCCGCATGCTAGAATGGCTTTACCTCTTGAGGTGACACAGGAACCTGTTTTTGTGAATGCCAAACAATATCAAGGGATCCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTAATAAAAATTAGAAAGCCGTATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGAGGACGATTTGCCAAGAAAAATGAAGTTAATTCTTCGAGTTCTACTATGAAGAACAAGGACTCTGGTTCTGGTCAAGCTTTCTCGTCGCACTCTGCTGGTTCATCGGGTTCTGAAGCTGCGCCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGTGAGGACGCAGTTGCATGAGGTGTACGAAGCTCGAAGTTATGTGAATGGCGGTGGACAATTTCATAATTACAGTAGCTTCCAAGCTTCCTCATATGCTTTACGGTCTGGTGAGAGAGGTGATGATGGAGACTGTTCGGGACAGCAACGAGGAAGCATCTCAGAAAATCAGGCAGCACAGAGGCGTCTTGCCATCAAGTGA 1032 45.45 MQSKPRSVNQLESEPPNMQQTSSYSEPWWRSIGYNHISPPAAGGNLSNSTSLECPNGASESNDGPSMSNDDLNEDDDDDTTKDSHAVSYGQVQNNSQHAVSAAPTVHGGCITQPSQLELVGHSIACASNLYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKIRKPYLHESRHQHAMRRARGSGGRFAKKNEVNSSSSTMKNKDSGSGQAFSSHSAGSSGSEAAPCALAETWNSSNGQQEVRTQLHEVYEARSYVNGGGQFHNYSSFQASSYALRSGERGDDGDCSGQQRGSISENQAAQRRLAIK 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8298473 8304360 - Cp4.1LG16g08750.1 Cpe16g00877 483252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00877 343 MobiDBLite consensus disorder prediction 1 84 - -
Cpe16g00877 343 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 169 224 IPR001289 GO:0003700|GO:0006355
Cpe16g00877 343 MobiDBLite consensus disorder prediction 226 257 - -
Cpe16g00877 343 ProSiteProfiles NF-YA/HAP2 family profile. 167 227 IPR001289 GO:0003700|GO:0006355
Cpe16g00877 343 MobiDBLite consensus disorder prediction 207 221 - -
Cpe16g00877 343 PRINTS CCAAT-binding transcription factor subunit B signature 170 192 IPR001289 GO:0003700|GO:0006355
Cpe16g00877 343 PRINTS CCAAT-binding transcription factor subunit B signature 201 224 IPR001289 GO:0003700|GO:0006355
Cpe16g00877 343 MobiDBLite consensus disorder prediction 41 68 - -
Cpe16g00877 343 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 334 IPR001289 GO:0003700|GO:0006355
Cpe16g00877 343 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 334 - -
Cpe16g00877 343 ProSitePatterns NF-YA/HAP2 subunit signature. 172 192 IPR018362 GO:0003677|GO:0016602
Cpe16g00877 343 Gene3D - 167 229 - -
Cpe16g00877 343 SMART cbf3 166 227 IPR001289 GO:0003700|GO:0006355
Cpe16g00877 343 MobiDBLite consensus disorder prediction 312 343 - -
Cpe16g00877 343 MobiDBLite consensus disorder prediction 207 259 - -
Cpe16g00877 343 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe16g00877 Cpe18g00169 CCT
Cpe05g00493 Cpe16g00877 CCT
Cpe16g00877 Cpe18g00169 ECH
Cpe05g00493 Cpe16g00877 ECH
Cpe04g00917 Cpe16g00877 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00877 Cpe-Chr16:8298473 Cpe19g01172 Cpe-Chr19:7895436 3.58E-32 dispersed
Cpe12g00827 Cpe-Chr12:7365749 Cpe16g00877 Cpe-Chr16:8298473 2.34E-43 wgd
Cpe16g00877 Cpe-Chr16:8298473 Cpe17g00690 Cpe-Chr17:5519163 2.60E-51 wgd
Cpe16g00877 Cpe-Chr16:8298473 Cpe18g00169 Cpe-Chr18:3291582 4.40E-103 wgd
Cpe16g00877 Cpe-Chr16:8298473 Cpe04g00917 Cpe-Chr4:8349277 1.93E-102 wgd
Cpe16g00877 Cpe-Chr16:8298473 Cpe05g00493 Cpe-Chr5:2909784 3.08E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50755 PF02045 CBFB_NFYA 4.50E-26 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00877 K08064 - csv:101212961 593.964