Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00887 ATGACTGATCCCTACTCCATGCTTCACCCCTACTTTTCTTCTTATTCTTCTTCTTCTAAATCTTACTCTCCTTATCATGATCTCTTCTCTCTTTCTTACTCTAATGATAACAATACCCTAAAAAACACATCCTCCTCCTCCTCCTCCTCATTCACAACAACCCATGGATCATTTTCTCCTGATTCTTGTTCCTCCCCTCGAGTCCTTCCCCTTTTAAGCTTGAGCCCTGCAAGGCATGATCAAGAACATCACTCCTGTAGGCCTTGTGAAGACGAGGAGGATGAGGAGGAGGAGAGCGTTACTGTTGCTTTGCATTTAGGGCTTCCAACTCCTCCTTCTTCTGATCTGATTTTGAGGCTCTCTTCAACTGAGATCTCAGACAAGGAAGACCAACAAGAAGCTGTCCCTGTTGTTGTTCCTAACTACTACTCCTCCTCTACTGCTGGACTCAACAAGGGTCAGTATTGGATTCCCACTCCTGCTCAGATTCTGATTGGTCCAACTCACTTCTCTTGCCCTCTTTGCTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCACAGTCACTAAGAGGAACACAACCAACAGCGATGCTTAGGCTGCCATGTTACTGCTGTGCGCCAGGGTGCAGAAACAACATAGACCATCCAAGGTCCAAGCCATTGAAAGACTTCAGAACCCTTCAAACGCATTACAAAAGAAAGCATGGAATCAAGCCATTTACATGTAGAAAATGTGGGAAGGCCTTTGCTGTGAGAGGGGACTGGAGAACTCACGAGAAGAATTGTGGGAAGCTTTGGCATTGCACTTGTGGCTCTGATTTTAAGCACAAGAGGTCTCTCAAAGATCACATCAAGGCCTTTGGACATGGCCATGCAGCTTATGGGATTGACTCTTTTGACGAAGATGATGAGGCAGCTTCTGAGATTGAACATGATAATGACTTGTCTCTAAGGAATGGAGATTGA 1008 45.24 MTDPYSMLHPYFSSYSSSSKSYSPYHDLFSLSYSNDNNTLKNTSSSSSSSFTTTHGSFSPDSCSSPRVLPLLSLSPARHDQEHHSCRPCEDEEDEEEESVTVALHLGLPTPPSSDLILRLSSTEISDKEDQQEAVPVVVPNYYSSSTAGLNKGQYWIPTPAQILIGPTHFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDSFDEDDEAASEIEHDNDLSLRNGD 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8355545 8357971 + Cp4.1LG16g08860.1 Cpe16g00887 483262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00887 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 170 197 IPR013087 -
Cpe16g00887 335 SMART c2h2final6 280 303 IPR013087 -
Cpe16g00887 335 SMART c2h2final6 254 274 IPR013087 -
Cpe16g00887 335 SMART c2h2final6 170 192 IPR013087 -
Cpe16g00887 335 ProSitePatterns Zinc finger C2H2 type domain signature. 172 192 IPR013087 -
Cpe16g00887 335 MobiDBLite consensus disorder prediction 79 100 - -
Cpe16g00887 335 MobiDBLite consensus disorder prediction 36 65 - -
Cpe16g00887 335 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 13 328 - -
Cpe16g00887 335 Gene3D Classic Zinc Finger 230 308 - -
Cpe16g00887 335 PANTHER ZINC FINGER PROTEIN WIP2 13 328 IPR043584 GO:0003700|GO:0010468
Cpe16g00887 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 281 IPR013087 -
Cpe16g00887 335 SUPERFAMILY beta-beta-alpha zinc fingers 235 274 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g01159 Cpe-Chr10:8500987 Cpe16g00887 Cpe-Chr16:8355545 1.90E-130 dispersed
Cpe16g00887 Cpe-Chr16:8355545 Cpe19g00081 Cpe-Chr19:598309 7.69E-127 dispersed
Cpe12g00821 Cpe-Chr12:7326664 Cpe16g00887 Cpe-Chr16:8355545 7.67E-114 wgd
Cpe16g00887 Cpe-Chr16:8355545 Cpe17g00682 Cpe-Chr17:5457674 7.98E-113 wgd
Cpe16g00887 Cpe-Chr16:8355545 Cpe05g00504 Cpe-Chr5:2977391 6.60E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50757 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00887 - - bhj:120089206 474.552