Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00890 ATGGGATCCATGAACTCCAACAATTGGCTTTCCTTTCCACTTTCACCCACTAATCCCTCTTTGCCTCCACATCTTCAAACACCAACTCATGCCCATCACTTCTCTTTGGGAAATTTGGAGAATGACAATATGGATATCCCATTTCAAACCCACGTTCCGAAAGTAGCAGACTTTTTAGGCGTAAGCAAGGCAGAAAATGAGGCAGATCTCATTGGGTTTAATCAAATTCATGAAGCGAATGATACGGATTACTTGTTTCCAATCACAAGATTGGTTCCTCTTCAACAACACCCAACACCCGCGGCTTCTCCTATCAATATGGACTCTACTACTAACTACGACCCTCAAGATAACTCCAACAGCTTGCAGTCTTTGACACTTTCAATGGGCAGTGGGAAGCCCTCTACTTGTGAAACCAGCTCCACCCCTGACAATGCAAACAATAATACCACTCTCGATGTCACTCCTAGAAGAACTTTGGACACTTTTGGGCAAAGGACTTCAATTTATCGCGGAGTGACCAGGCATAGATGGACGGGAAGGTATGAAGCACATTTATGGGATAATAGTTGCAGGAGGGAAGGGCAGTCGAGGAAGGGTCGCCAAGGTGGGTATGACAAAGAAGATAAAGCAGCTAGGGCTTATGATCTTGCTGCATTGAAGTATTGGGGAACATCCACCACCACCAACTTTCCTATTAGTAACTACGAGAAGGAAGTTGAGGAAATGAAGCACATGACAAGACAAGAATTTGTGGCTTCCATTAGAAGGAAGAGTAGTGGGTTTTCAAGGGGCGCGTCAATGTATCGTGGAGTTACAAGGCACCACCAGCATGGGAGATGGCAGGCTAGGATTGGCAGAGTGGCAGGAAACAAAGATCTTTATTTGGGAACCTTCAGCACGGAAGAGGAGGCAGCAGAGGCATACGACATAGCGGCCATAAAATTCAGAGGGCTTAATGCAGTCACCAACTTTGACATGAGCCGTTACGACGTGAAAAGCATACTAGAGAGCAACACGCTCCCAATAGGCGGCGGTGCTGCCAAACGTCTGAAAGAGGCACAAGCCATCGAGTCGTCTCGAAAGCGGGACGAAATGATTGCGCTTGGTTCCTCCTCCTCTTTCCAATATGGAAGCTCATCATCCTCTAGTAATTCCTCCAATCACAGGCTACAACAACAACCACAACAACCCTCTTACCCTCTACTCCAACAGCCTAATTTGAATATGGACCACCATCACCATCACCACCACCACCACCTTCAAACCCAGCCTTTCCTCTCTCTTCAAAACCACCACGACATTTCTCAATACACCAACGATCCCTCCTCCTTTCACCACTCTTCTACTTACATGCACACCCAACTCCAGCTTCACCACCACCAATCTGATAATGCCCCTTATCCTAACAACAACAACAACAACAACAACCATCAATTCTACGGCGGCGCTGGTGGTGGCTATCTTCATAACCATCCGGGTTTGCTCCATGGGATGATCAACATGGGCGGCGGTGGCGGCGGGGGAGGGTCTAATTTGGAGAGTAGTAACAACAACAATAATGCGTTGTCCAGTGCGAATCATTTTGAGAATCCTAATAATAATAGTAATGGAGGGTATCTTGGGAATGCATTTGGGATGGGTTCTACATCGGCCACCGCGAACAACGGCGCCCCAGCTGAAGAATACGCACTGGTTAAGGTTGACTATGATATGCCGCCTAATGCTGGTGGGTATGGTAGCTGGTCGGGGGATTCGGTACAGGGTTCTAACCCTGGGGTTTTCTCCATGTGGAACGATTGA 1803 47.42 MGSMNSNNWLSFPLSPTNPSLPPHLQTPTHAHHFSLGNLENDNMDIPFQTHVPKVADFLGVSKAENEADLIGFNQIHEANDTDYLFPITRLVPLQQHPTPAASPINMDSTTNYDPQDNSNSLQSLTLSMGSGKPSTCETSSTPDNANNNTTLDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAIESSRKRDEMIALGSSSSFQYGSSSSSSNSSNHRLQQQPQQPSYPLLQQPNLNMDHHHHHHHHHLQTQPFLSLQNHHDISQYTNDPSSFHHSSTYMHTQLQLHHHQSDNAPYPNNNNNNNNHQFYGGAGGGYLHNHPGLLHGMINMGGGGGGGGSNLESSNNNNNALSSANHFENPNNNSNGGYLGNAFGMGSTSATANNGAPAEEYALVKVDYDMPPNAGGYGSWSGDSVQGSNPGVFSMWND 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8370460 8373031 + Cp4.1LG16g08830.1 Cpe16g00890 483265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00890 600 MobiDBLite consensus disorder prediction 99 154 - -
Cpe16g00890 600 MobiDBLite consensus disorder prediction 373 425 - -
Cpe16g00890 600 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 8 599 - -
Cpe16g00890 600 ProSiteProfiles AP2/ERF domain profile. 169 232 IPR001471 GO:0003700|GO:0006355
Cpe16g00890 600 Pfam AP2 domain 269 318 IPR001471 GO:0003700|GO:0006355
Cpe16g00890 600 Pfam AP2 domain 169 224 IPR001471 GO:0003700|GO:0006355
Cpe16g00890 600 Gene3D AP2/ERF domain 268 328 IPR036955 GO:0003700|GO:0006355
Cpe16g00890 600 Gene3D AP2/ERF domain 169 234 IPR036955 GO:0003700|GO:0006355
Cpe16g00890 600 PRINTS Ethylene responsive element binding protein signature 170 181 IPR001471 GO:0003700|GO:0006355
Cpe16g00890 600 PRINTS Ethylene responsive element binding protein signature 308 328 IPR001471 GO:0003700|GO:0006355
Cpe16g00890 600 MobiDBLite consensus disorder prediction 373 406 - -
Cpe16g00890 600 SUPERFAMILY DNA-binding domain 267 328 IPR016177 GO:0003677
Cpe16g00890 600 MobiDBLite consensus disorder prediction 97 154 - -
Cpe16g00890 600 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 599 - -
Cpe16g00890 600 SMART rav1_2 268 332 IPR001471 GO:0003700|GO:0006355
Cpe16g00890 600 SMART rav1_2 169 238 IPR001471 GO:0003700|GO:0006355
Cpe16g00890 600 SUPERFAMILY DNA-binding domain 168 234 IPR016177 GO:0003677
Cpe16g00890 600 MobiDBLite consensus disorder prediction 510 535 - -
Cpe16g00890 600 ProSiteProfiles AP2/ERF domain profile. 268 326 IPR001471 GO:0003700|GO:0006355
Cpe16g00890 600 CDD AP2 168 234 IPR001471 GO:0003700|GO:0006355
Cpe16g00890 600 CDD AP2 267 328 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00499 Cpe-Chr10:2922938 Cpe16g00890 Cpe-Chr16:8370460 9.23E-97 dispersed
Cpe11g00106 Cpe-Chr11:586597 Cpe16g00890 Cpe-Chr16:8370460 6.52E-109 dispersed
Cpe11g00728 Cpe-Chr11:5567673 Cpe16g00890 Cpe-Chr16:8370460 3.60E-108 dispersed
Cpe14g00643 Cpe-Chr14:4162762 Cpe16g00890 Cpe-Chr16:8370460 5.56E-96 dispersed
Cpe16g00890 Cpe-Chr16:8370460 Cpe19g00692 Cpe-Chr19:5444619 3.76E-108 dispersed
Cpe16g00890 Cpe-Chr16:8370460 Cpe02g01743 Cpe-Chr2:14248478 4.99E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50758 PF00847 AP2 1.80E-08 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00890 K09285 - csv:101207097 867.455