Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe16g00890 | ATGGGATCCATGAACTCCAACAATTGGCTTTCCTTTCCACTTTCACCCACTAATCCCTCTTTGCCTCCACATCTTCAAACACCAACTCATGCCCATCACTTCTCTTTGGGAAATTTGGAGAATGACAATATGGATATCCCATTTCAAACCCACGTTCCGAAAGTAGCAGACTTTTTAGGCGTAAGCAAGGCAGAAAATGAGGCAGATCTCATTGGGTTTAATCAAATTCATGAAGCGAATGATACGGATTACTTGTTTCCAATCACAAGATTGGTTCCTCTTCAACAACACCCAACACCCGCGGCTTCTCCTATCAATATGGACTCTACTACTAACTACGACCCTCAAGATAACTCCAACAGCTTGCAGTCTTTGACACTTTCAATGGGCAGTGGGAAGCCCTCTACTTGTGAAACCAGCTCCACCCCTGACAATGCAAACAATAATACCACTCTCGATGTCACTCCTAGAAGAACTTTGGACACTTTTGGGCAAAGGACTTCAATTTATCGCGGAGTGACCAGGCATAGATGGACGGGAAGGTATGAAGCACATTTATGGGATAATAGTTGCAGGAGGGAAGGGCAGTCGAGGAAGGGTCGCCAAGGTGGGTATGACAAAGAAGATAAAGCAGCTAGGGCTTATGATCTTGCTGCATTGAAGTATTGGGGAACATCCACCACCACCAACTTTCCTATTAGTAACTACGAGAAGGAAGTTGAGGAAATGAAGCACATGACAAGACAAGAATTTGTGGCTTCCATTAGAAGGAAGAGTAGTGGGTTTTCAAGGGGCGCGTCAATGTATCGTGGAGTTACAAGGCACCACCAGCATGGGAGATGGCAGGCTAGGATTGGCAGAGTGGCAGGAAACAAAGATCTTTATTTGGGAACCTTCAGCACGGAAGAGGAGGCAGCAGAGGCATACGACATAGCGGCCATAAAATTCAGAGGGCTTAATGCAGTCACCAACTTTGACATGAGCCGTTACGACGTGAAAAGCATACTAGAGAGCAACACGCTCCCAATAGGCGGCGGTGCTGCCAAACGTCTGAAAGAGGCACAAGCCATCGAGTCGTCTCGAAAGCGGGACGAAATGATTGCGCTTGGTTCCTCCTCCTCTTTCCAATATGGAAGCTCATCATCCTCTAGTAATTCCTCCAATCACAGGCTACAACAACAACCACAACAACCCTCTTACCCTCTACTCCAACAGCCTAATTTGAATATGGACCACCATCACCATCACCACCACCACCACCTTCAAACCCAGCCTTTCCTCTCTCTTCAAAACCACCACGACATTTCTCAATACACCAACGATCCCTCCTCCTTTCACCACTCTTCTACTTACATGCACACCCAACTCCAGCTTCACCACCACCAATCTGATAATGCCCCTTATCCTAACAACAACAACAACAACAACAACCATCAATTCTACGGCGGCGCTGGTGGTGGCTATCTTCATAACCATCCGGGTTTGCTCCATGGGATGATCAACATGGGCGGCGGTGGCGGCGGGGGAGGGTCTAATTTGGAGAGTAGTAACAACAACAATAATGCGTTGTCCAGTGCGAATCATTTTGAGAATCCTAATAATAATAGTAATGGAGGGTATCTTGGGAATGCATTTGGGATGGGTTCTACATCGGCCACCGCGAACAACGGCGCCCCAGCTGAAGAATACGCACTGGTTAAGGTTGACTATGATATGCCGCCTAATGCTGGTGGGTATGGTAGCTGGTCGGGGGATTCGGTACAGGGTTCTAACCCTGGGGTTTTCTCCATGTGGAACGATTGA | 1803 | 47.42 | MGSMNSNNWLSFPLSPTNPSLPPHLQTPTHAHHFSLGNLENDNMDIPFQTHVPKVADFLGVSKAENEADLIGFNQIHEANDTDYLFPITRLVPLQQHPTPAASPINMDSTTNYDPQDNSNSLQSLTLSMGSGKPSTCETSSTPDNANNNTTLDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAIESSRKRDEMIALGSSSSFQYGSSSSSSNSSNHRLQQQPQQPSYPLLQQPNLNMDHHHHHHHHHLQTQPFLSLQNHHDISQYTNDPSSFHHSSTYMHTQLQLHHHQSDNAPYPNNNNNNNNHQFYGGAGGGYLHNHPGLLHGMINMGGGGGGGGSNLESSNNNNNALSSANHFENPNNNSNGGYLGNAFGMGSTSATANNGAPAEEYALVKVDYDMPPNAGGYGSWSGDSVQGSNPGVFSMWND | 600 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 8370460 | 8373031 | + | Cp4.1LG16g08830.1 | Cpe16g00890 | 483265 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe16g00890 | 600 | MobiDBLite | consensus disorder prediction | 99 | 154 | - | - | |
Cpe16g00890 | 600 | MobiDBLite | consensus disorder prediction | 373 | 425 | - | - | |
Cpe16g00890 | 600 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 | 8 | 599 | - | - | |
Cpe16g00890 | 600 | ProSiteProfiles | AP2/ERF domain profile. | 169 | 232 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe16g00890 | 600 | Pfam | AP2 domain | 269 | 318 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe16g00890 | 600 | Pfam | AP2 domain | 169 | 224 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe16g00890 | 600 | Gene3D | AP2/ERF domain | 268 | 328 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe16g00890 | 600 | Gene3D | AP2/ERF domain | 169 | 234 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe16g00890 | 600 | PRINTS | Ethylene responsive element binding protein signature | 170 | 181 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe16g00890 | 600 | PRINTS | Ethylene responsive element binding protein signature | 308 | 328 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe16g00890 | 600 | MobiDBLite | consensus disorder prediction | 373 | 406 | - | - | |
Cpe16g00890 | 600 | SUPERFAMILY | DNA-binding domain | 267 | 328 | IPR016177 | GO:0003677 | |
Cpe16g00890 | 600 | MobiDBLite | consensus disorder prediction | 97 | 154 | - | - | |
Cpe16g00890 | 600 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 8 | 599 | - | - | |
Cpe16g00890 | 600 | SMART | rav1_2 | 268 | 332 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe16g00890 | 600 | SMART | rav1_2 | 169 | 238 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe16g00890 | 600 | SUPERFAMILY | DNA-binding domain | 168 | 234 | IPR016177 | GO:0003677 | |
Cpe16g00890 | 600 | MobiDBLite | consensus disorder prediction | 510 | 535 | - | - | |
Cpe16g00890 | 600 | ProSiteProfiles | AP2/ERF domain profile. | 268 | 326 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe16g00890 | 600 | CDD | AP2 | 168 | 234 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe16g00890 | 600 | CDD | AP2 | 267 | 328 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe10g00499 | Cpe-Chr10:2922938 | Cpe16g00890 | Cpe-Chr16:8370460 | 9.23E-97 | dispersed | |
Cpe11g00106 | Cpe-Chr11:586597 | Cpe16g00890 | Cpe-Chr16:8370460 | 6.52E-109 | dispersed | |
Cpe11g00728 | Cpe-Chr11:5567673 | Cpe16g00890 | Cpe-Chr16:8370460 | 3.60E-108 | dispersed | |
Cpe14g00643 | Cpe-Chr14:4162762 | Cpe16g00890 | Cpe-Chr16:8370460 | 5.56E-96 | dispersed | |
Cpe16g00890 | Cpe-Chr16:8370460 | Cpe19g00692 | Cpe-Chr19:5444619 | 3.76E-108 | dispersed | |
Cpe16g00890 | Cpe-Chr16:8370460 | Cpe02g01743 | Cpe-Chr2:14248478 | 4.99E-114 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50758 | PF00847 | AP2 | 1.80E-08 | CL0081 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe16g00890 | K09285 | - | csv:101207097 | 867.455 |