Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00933 ATGGCTGTAACAGCCCCAGGGCAGCTCAACGTTAACGAGCCCCCTTCGTGGGGATCTAGAAGTGTCGATTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCGCTGAAAAAAATACGGATGGATAATGAGAGGGAGGGGTTCCCTATTACTGCCATTCGAGAAATCAAAATTCTGAAGAAACTCCATCATGAAAATGTAATCAAGTTGAAAGAAATTGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAGCCAGGCATGTTCTCTATCTTCATTTGCAGCATTAGGCTTCAATACCATACAACTGTCATTTTCATTTTAGTAGAATTTAGTTGCATCAATGGTAACAAGTACAAAGGTGGTATCTACATGGTTTTCGAGTACATGGATCATGATTTGACAGGTCTTGCTGATCGTCCGGGGATGAGATTTTCAGTTCCCCAAATCAAGTGTTACATGAGGCAGCTTCTCACCGGGCTTCACTATTGTCATGTAAATCAAGTACTGCATAGAGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATTTGAAGCTTGCAGATTTTGGGCTTGCCCGTTCATTTTCTAACGATCACAATGCAAATCTAACAAATCGTGTCATTACCTTATGGTACAGACCTCCTGAATTGCTCCTTGGGTCGACCAAATATGGTCCAGCTGTAGATATGTGGTCTGTTGGTTGTATATTTGCAGAGCTTCTGCATGGGAAGCCAATATTCCCTGGGAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCTCCAGATGAAGTCAATTGGCCCGGGGTTTCTAAAATCCCTTGGTACAACAATTTTAAGCCCACAAGACCAATGAAGAGACGTATTAGAGAAGTTTTCAGGCACTTTGATCGTCATGCTTTAGAACTGTTAGAGAAGATGATTACTCTCGATCCTTCTCAGAGGATATCTGCCAAGGATGCCCTGGATGCGGAGTACTTTTGGACGGATCCATTACCCTGTGACCCCAAGAGTTTGCCAAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGGCAACAGCAACGACAACATGAAGAAAATGCAAAGCGACAGAAGTTGCAACACCCACAGCATGCACGCCTTCCACCTATTCAGCAGTCTGGGCAAGCACATGCACACATGCGACCGGTACCCAACCAACCAATTCACGGGTCTCAACCACCAGTTGCTGCAGGACCTAGCCATCATTTTGGAAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCTGGTGGAAATCCCCCTTCTGGATACAACCATTCAAGTCGTGGTGGTCAAGGTGGTTATGGTAACAATCAATATGGTCAAGGACGAGGCGCTGCACCCTATGGGTCCGGTAACATGTCAGGTGCTGGTCCTCGAGGTGGAGCTGGAGGTGGCAGTAGTTATGGCATGGGAGCTCCAAATTACCCACAGAATGGTCCATATCCTGGTAGTTCTGGCACTGGCCGTGGCTCCAATGTGATGGGTGGAAACCGGAACCAACAATACGGGTGGCAACAGTAA 1629 45.73 MAVTAPGQLNVNEPPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPGMFSIFICSIRLQYHTTVIFILVEFSCINGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRIREVFRHFDRHALELLEKMITLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEENAKRQKLQHPQHARLPPIQQSGQAHAHMRPVPNQPIHGSQPPVAAGPSHHFGKPRGPPGPGRYPGGNPPSGYNHSSRGGQGGYGNNQYGQGRGAAPYGSGNMSGAGPRGGAGGGSSYGMGAPNYPQNGPYPGSSGTGRGSNVMGGNRNQQYGWQQ 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8608624 8614926 - Cp4.1LG16g09420.1 Cpe16g00933 483308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00933 542 Pfam Protein kinase domain 25 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe16g00933 542 Gene3D Phosphorylase Kinase; domain 1 14 149 - -
Cpe16g00933 542 MobiDBLite consensus disorder prediction 514 542 - -
Cpe16g00933 542 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Cpe16g00933 542 MobiDBLite consensus disorder prediction 363 542 - -
Cpe16g00933 542 SMART serkin_6 25 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe16g00933 542 MobiDBLite consensus disorder prediction 456 474 - -
Cpe16g00933 542 MobiDBLite consensus disorder prediction 365 394 - -
Cpe16g00933 542 PANTHER CYCLIN-DEPENDENT KINASE C-2 6 477 - -
Cpe16g00933 542 Gene3D Transferase(Phosphotransferase) domain 1 150 392 - -
Cpe16g00933 542 PANTHER CELL DIVISION PROTEIN KINASE 6 477 - -
Cpe16g00933 542 SUPERFAMILY Protein kinase-like (PK-like) 19 360 IPR011009 -
Cpe16g00933 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Cpe16g00933 542 CDD STKc_CDK9_like 25 352 - -
Cpe16g00933 542 ProSiteProfiles Protein kinase domain profile. 25 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01604 Cpe-Chr1:9789478 Cpe16g00933 Cpe-Chr16:8608624 9.81E-88 dispersed
Cpe01g02197 Cpe-Chr1:18687701 Cpe16g00933 Cpe-Chr16:8608624 0 dispersed
Cpe09g00576 Cpe-Chr9:3977814 Cpe16g00933 Cpe-Chr16:8608624 7.27E-88 dispersed
Cpe11g00061 Cpe-Chr11:324146 Cpe16g00933 Cpe-Chr16:8608624 3.10E-88 dispersed
Cpe16g00933 Cpe-Chr16:8608624 Cpe20g00292 Cpe-Chr20:1630422 8.37E-116 dispersed
Cpe16g00933 Cpe-Chr16:8608624 Cpe02g01011 Cpe-Chr2:9322587 7.19E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62924 PF00069 Pkinase 2.30E-72 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00933 K08819 - csv:101220936 945.266