Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00938 ATGGCGACGAGCTTCGTCCACTCTCACAGACCCGAGTTTCTCACCGTCGCCGTCGCTGCGGTTGCCATCGGCGTCGCTACTGCCTACTATTTCTATATCACCAAGAAATCTAAACCCCAAGGTTGCTTGGACCCTGATAACTTAAAAGAATTTAAGCTAGTTAAACGCACACAGCTTAGCCATAATGTAGCGAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAATCTTGGGGCTGCCGATTGGGCAGCATATGAGTTGCAGAGGAAAAGATAGCGAAGGTGAAGAAGTTGTGAAACCGTACACTCCAACCAGTTTGGATACAGATGTTGGATACTTTGATTTGGTCATAAAGATGTATCCTCAAGGAAGGATGTCCCACCACTTTCGTGAGATGCGTGAAGGTGATTTCTTGGCGGTGAAAGGTCCTAAGGGACGTTTCAAGTATGAAGCTAATGAAGTGGAGGCCTTTGGGATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTGCACGAGCAATACTAGAAAACCCAGTTGATCACACCAATGTGCATCTTATATATGCTAATGCTACTTGTGAAGACATTCTTCTAAAGGAAGAATTGGATAGTCTTGCGTCTAGCCTCCCGAAGGATGGGATGGCGGGCGTTGGCTTTGTGACTGAGGAAATGATACGACTACACTGTCCTGGACCATCCCCTAATGTTCGGATATTGAGGTGCGGACCACCCCCCATGAACAAAGCTATGGCTGCTTACCTCAAAACTATTGGCTATACTTCCCAAATGCAGTTCCAGTTCTAA 810 47.04 MATSFVHSHRPEFLTVAVAAVAIGVATAYYFYITKKSKPQGCLDPDNLKEFKLVKRTQLSHNVAKFRFSLPTPTSILGLPIGQHMSCRGKDSEGEEVVKPYTPTSLDTDVGYFDLVIKMYPQGRMSHHFREMREGDFLAVKGPKGRFKYEANEVEAFGMLAGGTGITPMFQVARAILENPVDHTNVHLIYANATCEDILLKEELDSLASSLPKDGMAGVGFVTEEMIRLHCPGPSPNVRILRCGPPPMNKAMAAYLKTIGYTSQMQFQF 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8657691 8662600 - Cp4.1LG16g09410.1 Cpe16g00938 483313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00938 269 Gene3D Translation factors 41 139 - -
Cpe16g00938 269 Pfam Oxidoreductase NAD-binding domain 159 252 IPR001433 GO:0016491
Cpe16g00938 269 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Cpe16g00938 269 PANTHER NADH-CYTOCHROME B5 REDUCTASE 6 269 IPR001834 GO:0016491
Cpe16g00938 269 PRINTS Cytochrome B5 reductase signature 77 88 - -
Cpe16g00938 269 PRINTS Cytochrome B5 reductase signature 135 149 - -
Cpe16g00938 269 PRINTS Cytochrome B5 reductase signature 99 106 - -
Cpe16g00938 269 PRINTS Cytochrome B5 reductase signature 196 207 - -
Cpe16g00938 269 PRINTS Cytochrome B5 reductase signature 158 177 - -
Cpe16g00938 269 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 46 150 IPR017927 GO:0016491
Cpe16g00938 269 PANTHER NADH-CYTOCHROME B5 REDUCTASE 6 269 - -
Cpe16g00938 269 Pfam Oxidoreductase FAD-binding domain 51 149 IPR008333 -
Cpe16g00938 269 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 158 177 IPR001709 GO:0016491
Cpe16g00938 269 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 196 207 IPR001709 GO:0016491
Cpe16g00938 269 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 138 263 IPR039261 -
Cpe16g00938 269 CDD cyt_b5_reduct_like 51 269 - -
Cpe16g00938 269 Gene3D - 140 268 IPR039261 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00938 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - csv:101219272 457.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g01086 Cpe-Chr10:6608643 Cpe16g00938 Cpe-Chr16:8657691 7.02E-123 dispersed
Cpe16g00938 Cpe-Chr16:8657691 Cpe13g00590 Cpe-Chr13:5782089 2.05E-24 dispersed
Cpe16g00938 Cpe-Chr16:8657691 Cpe19g00231 Cpe-Chr19:1918564 9.68E-132 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g897 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1022 . . . . . . Cpe16g00938 . Bhi10g00465 Tan07g0597 Cmetu05g0368 . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G53560 73.2 3.7e-54 208.0
Cpe08g00396 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Cpe03g01589 . 1 149 NADPH P450 reductases AT5G53560 61.7 2.1e-49 192.2
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G53560 62.4 5.4e-45 177.6
Cpe15g00137 . 4 131 NADPH P450 reductases AT5G53560 64.1 3.5e-44 174.9
Cpe05g00119 . 61 180 NADPH P450 reductases AT5G53560 59.5 2.6e-39 158.7
Cpe08g00396 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.3e-48 186.8
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.9e-46 181.4
Cpe15g00137 . 2 132 NADPH P450 reductases AT5G48810 63.2 1.9e-45 179.1
Cpe03g01589 . 1 148 NADPH P450 reductases AT5G48810 58.0 1.3e-44 176.4
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G48810 55.0 6.5e-41 164.1
Cpe05g00119 . 61 181 NADPH P450 reductases AT5G48810 58.1 7.9e-39 157.1
Cpe08g00396 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Cpe03g01589 . 22 149 NADPH P450 reductases AT2G32720 74.2 1.2e-47 186.4
Cpe12g00095 . 22 133 NADPH P450 reductases AT2G32720 75.9 6.0e-44 174.1
Cpe15g00137 . 21 132 NADPH P450 reductases AT2G32720 71.4 6.2e-41 164.1
Cpe05g00584 CCT 22 133 NADPH P450 reductases AT2G32720 66.1 5.2e-40 161.0
Cpe05g00119 . 83 181 NADPH P450 reductases AT2G32720 74.7 4.9e-38 154.5
Cpe11g00394 . 31 145 NADPH P450 reductases AT1G26340 61.3 3.8e-38 154.8
Cpe19g00231 . 2 281 NADPH P450 reductases AT5G17770 81.1 5.5e-132 467.6
Cpe08g01365 . 2 280 NADPH P450 reductases AT5G17770 79.3 4.8e-128 454.5
Cpe10g01086 . 5 276 NADPH P450 reductases AT5G17770 80.0 1.2e-126 449.9
Cpe16g00938 . 1 269 NADPH P450 reductases AT5G17770 65.3 1.0e-101 367.1
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G53560 73.2 3.7e-54 208.0
Cpe08g00396 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Cpe03g01589 . 1 149 NADPH P450 reductases AT5G53560 61.7 2.1e-49 192.2
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G53560 62.4 5.4e-45 177.6
Cpe15g00137 . 4 131 NADPH P450 reductases AT5G53560 64.1 3.5e-44 174.9
Cpe05g00119 . 61 180 NADPH P450 reductases AT5G53560 59.5 2.6e-39 158.7
Cpe08g00396 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.3e-48 186.8
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.9e-46 181.4
Cpe15g00137 . 2 132 NADPH P450 reductases AT5G48810 63.2 1.9e-45 179.1
Cpe03g01589 . 1 148 NADPH P450 reductases AT5G48810 58.0 1.3e-44 176.4
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G48810 55.0 6.5e-41 164.1
Cpe05g00119 . 61 181 NADPH P450 reductases AT5G48810 58.1 7.9e-39 157.1
Cpe08g00396 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Cpe03g01589 . 22 149 NADPH P450 reductases AT2G32720 74.2 1.2e-47 186.4
Cpe12g00095 . 22 133 NADPH P450 reductases AT2G32720 75.9 6.0e-44 174.1
Cpe15g00137 . 21 132 NADPH P450 reductases AT2G32720 71.4 6.2e-41 164.1
Cpe05g00584 CCT 22 133 NADPH P450 reductases AT2G32720 66.1 5.2e-40 161.0
Cpe05g00119 . 83 181 NADPH P450 reductases AT2G32720 74.7 4.9e-38 154.5
Cpe11g00394 . 31 145 NADPH P450 reductases AT1G26340 61.3 3.8e-38 154.8
Cpe19g00231 . 2 281 NADPH P450 reductases AT5G17770 81.1 5.5e-132 467.6
Cpe08g01365 . 2 280 NADPH P450 reductases AT5G17770 79.3 4.8e-128 454.5
Cpe10g01086 . 5 276 NADPH P450 reductases AT5G17770 80.0 1.2e-126 449.9
Cpe16g00938 . 1 269 NADPH P450 reductases AT5G17770 65.3 1.0e-101 367.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00938 Cpe_Chr16 FPKM 19.709856 20.333422 28.077787 26.632772 56.388065 45.972988 54.223484 48.579254 51.282131 56.854977