Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00943 ATGGGAAACGGTGTGTCCAGCGAAAATAATGGTAATAATAATAATAATAGTAATAATGCGCTTGAATCCGATTTTGGATCGGAGCGAGCTTTGTCCCTCTGGGCCCCGATACTGCTGGGTATGATGGGAAATCCCCGTGGGCGTCGTAGATTCAGGCATCTAGAGTTTGACGAAGATGATGATGATAATAATGATCAGGAGCATGGGGATGGGGAGGGGAACCGTGTGAGTAGTGAGCCGACTGAGCTTGATTCGGTCATTAGGAGGAGGAGGAGAAGTTCGGCTACCATTCTACAGTTGCTCCAAGGTATCAGAGCTGGAATGGCAACTGGTGAATCAGAGAATAGTTACGAGGGAGAGAGGAGCAGAGAAAGAGAAAGAGAAAGAGAAAGAGAACGAGAACGAGAAAGAGAGCGGGTTATCCTTATAAATCCTTTCAACCAGACCATTGTAGTTCAAGGAGGTGAGAGTCAAAATCATAACGCTATAGGGTCGCTGGGTGATTATTTCGTAGGACCTGGTTTGGATTTGTTATTGCAACATCTAGCCGAGAATGATCCCAACAGATATGGCACTCCACCAGCCCAGAAGGAGGCAGTTGATGCGCTGCCCACGGTGAGAGTTGAATGCGGGGATAATCGTCTGCAATGTTCGGTGTGTTTGGATGAGTTTGAGATGGATGAAGAAGCCAAGGAGATGCCTTGTAAGCATAAGTTTCATTCAGGGTGTATTCTGCCGTGGCTGGAGCTGCATAGTTCCTGCCCAGTTTGTAGGCATCAATTGCCTGCGGATGAGTCCAAGCGTGATGCGGATGGTGGGTCGGCTAGGTTTATGGGTAGTGGCAGTGGGGAAATTGATGGGAGAAACGCATCTGGGACTGGGAGAAGGTTTTCGTTTCCATGGCCATTCAATGGCTTGTTTTCTTCGCAAGGAAACTCCTCGGGAGGAAGTGAAAATGTTTTGCCTCCTACTACCCTTAGAACAATCTGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCCAATTTTACCAACATTTTGTATATGTTATGCCTTTTCACTTCGCCCCTGCTTTCATTGCTATTCTTTCACATCCAATAACAACTACGTATGTATGTATGCAAAAGCTGGAGGCATCCCTTCTAATTCTACAGAGAAGATGCCAAGGCAAGAGGCACCGGTTTATTGA 1191 46.35 MGNGVSSENNGNNNNNSNNALESDFGSERALSLWAPILLGMMGNPRGRRRFRHLEFDEDDDDNNDQEHGDGEGNRVSSEPTELDSVIRRRRRSSATILQLLQGIRAGMATGESENSYEGERSRERERERERERERERERVILINPFNQTIVVQGGESQNHNAIGSLGDYFVGPGLDLLLQHLAENDPNRYGTPPAQKEAVDALPTVRVECGDNRLQCSVCLDEFEMDEEAKEMPCKHKFHSGCILPWLELHSSCPVCRHQLPADESKRDADGGSARFMGSGSGEIDGRNASGTGRRFSFPWPFNGLFSSQGNSSGGSENVLPPTTLRTICLLLLLLLLLPLPILPTFCICYAFSLRPCFHCYSFTSNNNYVCMYAKAGGIPSNSTEKMPRQEAPVY 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8679463 8680784 - Cp4.1LG16g09430.1 Cpe16g00943 483318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00943 396 MobiDBLite consensus disorder prediction 68 89 - -
Cpe16g00943 396 Pfam Ring finger domain 216 258 IPR001841 -
Cpe16g00943 396 MobiDBLite consensus disorder prediction 116 135 - -
Cpe16g00943 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 264 IPR013083 -
Cpe16g00943 396 CDD RING-H2_RNF181 216 261 - -
Cpe16g00943 396 MobiDBLite consensus disorder prediction 108 135 - -
Cpe16g00943 396 MobiDBLite consensus disorder prediction 55 89 - -
Cpe16g00943 396 MobiDBLite consensus disorder prediction 1 22 - -
Cpe16g00943 396 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 18 275 - -
Cpe16g00943 396 SMART ring_2 217 257 IPR001841 -
Cpe16g00943 396 ProSiteProfiles Zinc finger RING-type profile. 217 258 IPR001841 -
Cpe16g00943 396 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 275 - -
Cpe16g00943 396 SUPERFAMILY RING/U-box 212 264 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00943 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - csv:101216515 442.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00568 Cpe16g00943 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00943 Cpe-Chr16:8679463 Cpe20g00175 Cpe-Chr20:1001030 3.25E-47 dispersed
Cpe16g00943 Cpe-Chr16:8679463 Cpe05g00568 Cpe-Chr5:3428728 8.84E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g8 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g02369 Cam02g2520 Cec02g2568 Cco02g2597 Clacu02g2494 Cmu02g2425 Cre02g2744 . . . . . . . . . . . . . . . . . . . . . . . Cpe16g00943 . . . . . . . . . . . . . . . . . . .
Vvi6g12 . . . . Bpe01g00362 . . . . . . . . . . Cpe05g00568 . . . . . . . . Cla02g02368 Cam02g2519 Cec02g2566 Cco02g2595 Clacu02g2493 Cmu02g2424 Cre02g2742 . . . . . . Chy05g00006 Cme05g00008 Blo08g00158 Blo14g00331 . . . . Bma07g00317 Bma11g00345 . Cmo02g01194 Cmo20g00005 Cma02g01160 Cma20g00005 Car02g00960 Car20g00003 Cpe16g00943 . Bhi10g00490 Tan07g0562 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006217 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 0 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00943 Cpe_Chr16 FPKM 11.41104 10.514832 9.5899 7.978381 12.855774 15.74754 13.597684 3.864771 4.388202 3.447853