Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00001 ATGGCGTCTGAAATGATTGTCGAATCAGGCTCGTCGATAATAGATTTTGGGATGGAGTTAGTCGCGGATCATACTTCGGTGGTTTCTTTAAACTTATTTGTAGCTCTTCTTTGTGGTTGCATTGTTGTTGGTCATTTGTTAGAGGAAAACCGATGGATCAACGAGTCCATTACAGCCCTTGTCATTGGGTTGTGTACCGGCATCATCATATTGCTAACAACAAGAGGGAAAAGTTCGCATTTATTTTTGTTCAATGAAGAGCTTTTCTTTATCTATCTCCTTCCGCCTATCATTTTCAATGCCGGTTTCCAGGTCAAGAAGAAGCAGTTTTTCCGCAACATCATGACCATAGTGCTTTTTGGTGCTTTTGGCACTCTCATATCCTTCTGTATTATATCATTAGGCGCTTTGCACTTCTTCCAGAAAATGAATATTGGTTCTCTTGATCTTGGAGATTATCTTGCTATTGGAGCTATTTTTTCTGCAACAGACTCTGTTTGTACCTTACAGAACTTTGATCTGTCTCACATGAATTCAAGCATCATTCTGCAATTCATTGGGAACTTTTTGTATCTGTTCATTGCAAGTACCGTGCTGGGAATTTTAGTTGGCCTCCTTAGTGCATACATAATTAAGAAGCTCTACTTTGGCAGGCATTCTACTGATCGTGAAGTTGCTCTTATGATACTCATGGCGTACTTTTCTTATATGCTAGCTGAACTCTTCTATTTAAGTGCAATTCTCACCGTATTCTTTTGCGGTATTGTTATGTCTCACTATACATGGCATAACGTAACTGAAAGTTCCAGAGTTACTACAAAGCATGCTTTCGCCACTCTTTCTTTTGTTGCTGAGATCTTTATCTTTCTTTACGTTGGCATGGATGCTCTTGATATCGAGAAGTGGAGATTTGTTAGCCACAGTCCGGGGAAATCAATTGGGGTGAGCTCAATACTGTTGGGACTGGTTCTGGTTGGAAGAGCAGCCTTCGTTTTTCCATTATCCTCCTTGTCCAATCTGACCAAGAAGTCCTCGCATGAAAAACTCAACTTGGAACAACAAGTCACTATTTGGTGGGCTGGTCTCATGCGTGGTGCCGTTTCAATGGCACTTGCATATAATCAGGTTTGCCGAAGGACCTACCAAAATTGA 1152 40.8 MASEMIVESGSSIIDFGMELVADHTSVVSLNLFVALLCGCIVVGHLLEENRWINESITALVIGLCTGIIILLTTRGKSSHLFLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNIMTIVLFGAFGTLISFCIISLGALHFFQKMNIGSLDLGDYLAIGAIFSATDSVCTLQNFDLSHMNSSIILQFIGNFLYLFIASTVLGILVGLLSAYIIKKLYFGRHSTDREVALMILMAYFSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSHSPGKSIGVSSILLGLVLVGRAAFVFPLSSLSNLTKKSSHEKLNLEQQVTIWWAGLMRGAVSMALAYNQVCRRTYQN 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 13054 16580 - Cp4.1LG17g00770.1 Cpe17g00001 483319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00001 383 PANTHER SODIUM/HYDROGEN EXCHANGER 3 169 379 - -
Cpe17g00001 383 PRINTS Na+/H+ exchanger signature 157 167 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cpe17g00001 383 PRINTS Na+/H+ exchanger signature 88 99 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cpe17g00001 383 PRINTS Na+/H+ exchanger signature 102 116 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cpe17g00001 383 PRINTS Na+/H+ exchanger signature 117 125 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cpe17g00001 383 PANTHER SODIUM/HYDROGEN EXCHANGER 3 17 170 - -
Cpe17g00001 383 Pfam Sodium/hydrogen exchanger family 181 372 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cpe17g00001 383 PANTHER SODIUM/HYDROGEN EXCHANGER 17 170 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cpe17g00001 383 PANTHER SODIUM/HYDROGEN EXCHANGER 169 379 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00001 Cpe-Chr17:13054 Cpe20g00676 Cpe-Chr20:4583218 3.82E-21 dispersed
Cpe17g00096 Cpe-Chr17:590904 Cpe17g00001 Cpe-Chr17:13054 0 transposed
Cpe11g00927 Cpe-Chr11:7755738 Cpe17g00001 Cpe-Chr17:13054 1.21E-165 wgd
Cpe12g00971 Cpe-Chr12:8191682 Cpe17g00001 Cpe-Chr17:13054 8.98E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00001 - - cmos:111436756 686.026