Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00002 ATGTCTCTCAAGAGCATCATTCAAGATATGAGGTCCCGCTCCCGCCGCGTGGTGCAGGACGGCACGGCGCCGGAGCCAACGGACGGCCTCGTCCAAAGCTGCTGGGCCAATATGCCTCAGGAGCTTCTCAGGGAGGTTCTTATGAGAATCGAGGCATCGGAGACTTCTTGGCCACGGAGGAAGAGTGTCGTCGCTTGCGCTGGAGTATGCCGGAGCTGGCGGGCCATCACTAAGGAGATCGTCAAAACGCCGGAGGTTTCCGGCAAGTTAACGTTCCCGATCTCTATCAAGCAGCCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTCTTCCTCAGTTTGACTAATGCACTAAATGATGATGGTAAGTTTCTTCTTGCTGCTCGGAAATGCAAGCGACCGACCTACACAGACTATATTATCTCTTTGCACGCCGAGGATTTGTCGAAAGGGAGCAGCACCTATGTCGGGAAGTTGAGATCTAATTTCCTAGGAACTAAGTTCACAATCTTCGACGGGCAACCGCCACATTCGGGAGCGAAGATCACAAAAAGTCGCTCCACGAGGCTTGTGAATTTGAAACAAGTTTCGCCCAAATTCCCTGCTGGGAACTATCCAGTTGCTCACATTTCGTATGAACTAAATGTATTGGGATCAAGGGGTCCGAGGAGAATGCAGTGTATCATGGACGCTATTCCCGCTTCTGCAGTTGAACCTGGAGGAGTGGCTCCGACACCGACCGAGCTCTCGTTGAGCAATGTGGAACTGTTTCCATCGTTCCCGTTCTTAAGGTCGAAATCAAATGCAGATAGCTTGCTTTCTGAACCATTGGCTAGTCAGAAAGATGAAATGCTGGTGCTGAGAAACAAGACTCCCAGGTGGCACGAACAGCTTCAATGCTGGTGTTTGAATTTTCATGGACGAGTTACGATTGCTTCCGTGAAAAATTTTCAACTCGTCGCTTCTTCGGAAACCGAACCTCCTTCACAAGAACAAGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACCATGGATTTTCGTTACCCGATCTCGACTTTCCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1161 48.92 MSLKSIIQDMRSRSRRVVQDGTAPEPTDGLVQSCWANMPQELLREVLMRIEASETSWPRRKSVVACAGVCRSWRAITKEIVKTPEVSGKLTFPISIKQPGPRDPLLQCFIKRNRSNQTYYLFLSLTNALNDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKFPAGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASAVEPGGVAPTPTELSLSNVELFPSFPFLRSKSNADSLLSEPLASQKDEMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASSETEPPSQEQEKIILQFGKVGKDLFTMDFRYPISTFQAFAICLSSFDTKIACE 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 23583 28095 + Cp4.1LG17g00800.1 Cpe17g00002 483320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00002 386 Pfam F-box domain 35 82 IPR001810 GO:0005515
Cpe17g00002 386 PANTHER TUBBY-RELATED 1 386 - -
Cpe17g00002 386 Pfam Tub family 97 381 IPR000007 -
Cpe17g00002 386 ProSitePatterns Tub family signature 2. 371 386 IPR018066 -
Cpe17g00002 386 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 386 - -
Cpe17g00002 386 MobiDBLite consensus disorder prediction 1 26 - -
Cpe17g00002 386 SUPERFAMILY F-box domain 33 78 IPR036047 GO:0005515
Cpe17g00002 386 SUPERFAMILY Tubby C-terminal domain-like 84 386 IPR025659 -
Cpe17g00002 386 Gene3D Tubby Protein; Chain A 93 386 IPR025659 -
Cpe17g00002 386 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Cpe17g00002 386 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cpe17g00002 386 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cpe17g00002 386 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Cpe17g00002 386 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Cpe17g00002 386 PRINTS Tubby superfamily signature 316 332 IPR000007 -
Cpe17g00002 386 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Cpe17g00002 386 PRINTS Tubby superfamily signature 364 386 IPR000007 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01389 Cpe17g00002 CCT
Cpe03g01389 Cpe17g00002 ECH
Cpe12g00258 Cpe17g00002 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00519 Cpe-Chr1:2985673 Cpe17g00002 Cpe-Chr17:23583 2.49E-135 dispersed
Cpe14g00370 Cpe-Chr14:2264319 Cpe17g00002 Cpe-Chr17:23583 5.08E-130 dispersed
Cpe14g00525 Cpe-Chr14:3322335 Cpe17g00002 Cpe-Chr17:23583 3.10E-156 dispersed
Cpe17g00002 Cpe-Chr17:23583 Cpe01g02118 Cpe-Chr1:17906672 2.25E-144 dispersed
Cpe12g00258 Cpe-Chr12:1722248 Cpe17g00002 Cpe-Chr17:23583 0 wgd
Cpe17g00002 Cpe-Chr17:23583 Cpe03g01389 Cpe-Chr3:11176850 0 wgd
Cpe17g00002 Cpe-Chr17:23583 Cpe08g00216 Cpe-Chr8:1432750 1.67E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50761 PF01167 Tub 1.50E-110 CL0395 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00002 K19600 - csv:101203437 717.227