Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00005 ATGGCGAAACCCTCGAAACGACAGGTGTCTTCTGATGAAGCCATGTCCAATGGCTCGAGCTCGTCGGAGGAAGAGGAGCAAACTAACGAGCAGATCAATGAGGAGGAGGACGAGGAGGAGCTCGAAGCGGTAGCTCGCTCGGCAGGCTCTGACGAGGATGAAGCTGCCGAGGATTCAGATAACGATGCATCACCTGTCGAAAATGGCGAGGAAGAGGACGGAAGTAACGACGGCGATGATGATAAAGTCGATATTAGCAGGCGTGAAAAGGCCAGACTAAAAGAAATGCAACAAATGAAGAAGCAGAAGATTCAGGATATGTTGGATGCACAAAATGCTGCAATTGATGCTGATATGAATAATAAGGGGAAGGGACGCTTGAAATATCTTCTGCAACAAACTGAGATATTTGCTCATTTTGCTAAAGGCGAGCATTCTTCTTCTCAAAAGAAAACGAAAGGAAGGGGTCGTCATGCATCAAAGATAACTGAAGAGGAAGAAGATGAAGAATACCTTAAAGAGGAAGAAGATGGTTTATCTGGGACTGGGAACACTCGTCTCCTTACACAACCATCTTGTATCCAAGGGAAAATGAGGGATTATCAACTAGCTGGGTTAAATTGGCTCATTCGACTGTATGAGAATGGCATCAATGGAATCCTTGCAGATGAGATGGGGCTTGGCAAGACACTACAAACCATCTCTCTGTTGGGCTATCTTCACGAGTACAGAGGCATAACAGGCCCCCATATGGTAGTTGCACCAAAATCTACCCTGGGAAACTGGATGAATGAAATTCGTCGTTTTTGCCCTATCTTGCGAGCTGTAAAGTTTCTTGGAAATCCTGATGAAAGGAGGAATATACGGGAAAATTTACTGGTAGCTGGGAAGTTTGATGTCTGTGTTACCAGTTTCGAAATGGCCATCAAGGAGAAGTCTTGCTTGCGTCGTTTTAGTTGGCGCTACATTATTATTGATGAAGCTCATCGAATTAAGAATGAGAATTCCCTCCTTTCAAAGACAATGAGGCTTTATAATACCAACTATCGTCTTCTAATCACTGGCACGCCACTTCAGAACAATCTTCATGAACTGTGGTCTCTCCTCAATTTTCTTTTGCCTGAAATATTTAGTTCAGCTGAGACTTTCGATGAATGGTTTCAAATTTCTGGGGAAAATGATCAGCAGGAGGTTGTTCAACAACTTCACAAGGTCCTTCGACCTTTTCTTCTTCGGAGGCTGAAATCGGATGTTGAAAAAGGTTTACCACCAAAAAAGGAAACAATACTTAAAGTAGGCATGTCACAGATGCAAAAGCAATACTATCGTGCTTTGCTCCAGAAGGATCTTGAAGTTGTTAATGCTGGTGGTGAGCGTAAACGGCTTCTTAATATAGCTATGCAGCTCCGGAAATGTTGTAATCACCCATATTTATTTCAAGGTGCTGAACCTGGGCCTCCTTACACCACTGGAGATCATCTTATTACAAGTGCTGGTAAAATGGTTCTTTTGGACAAGTTGCTTCCAAAGCTGAAAGAGCGTGATTCTAGAGTCCTAATATTTTCGCAGATGACAAGACTGTTGGACATTCTTGAAGATTATTTAATGTTTCGTGGATACTACTACTGTCGGATTGATGGTAACACTGGTGGTGAAGATCGTGATGCATCCATTGATGCTTTCAACAAGCCAGGAAGTGAAAAATTTGTTTTCTTACTTTCAACCAGAGCTGGAGGTCTTGGTATTAATCTTGCTACTGCAGATGTAGTCATTCTTTACGACAGTGACTGGAATCCTCAAGTTGATCTGCAAGCCCAAGATCGTGCTCATAGAATTGGTCAGAAGAAGGAAGTTCAAGTGTTCCGGTTTTGCACTGAGTATACCATTGAGGAAAAAGTTATTGAAAGGGCTTACAAGAAACTTGCCCTTGATGCTTTGGTGATTCAACAAGGACGCTTAGCAGAGCAGAAAACTGTCAACAAGGATGAGCTACTTCAAATGGTGAGGTTTGGTGCTGAGATGGTTTTCAGTTCCAAAGATAGCACCATCACAGATGAGGACATTGACAGAATCATTGCAAAAGGAGAAGCAGCAACAGCAGAGCTTGATGCAAAGATGAAGAAATTTACAGAAGATGCCATTAAATTTAAGATGGATGAAAGTGGGGAGCTTCCTGACATGAACTGTCTAGTTTCTTTCTGTTTGATAATTTTCTGTTTTCTTTCTAATATTCAAGGAGTTTTATCTAATGCTTATGTGGTTTTGGCAGCTGCTGAATTGTATGATTTCGACGATGAGAAGGATGAAAATAAATTTGACTTCAAGAAAATTGTTAGTGAAAATTGGATTGAACCACCTAAAAGGGAGCGGAAGCGCAATTACTCGGAATCGGAATACTTTAAGCAAACAATGCGGCAGGGTGGTCCAACAAAACCAAAGGAGCCCAGGATTCCTCGCATGCCTCAGTTGCACGATTTCCAGTTTTTCAACACACAAAGGTTGAGTGAACTATATGAAAAAGAAGTGCGGTATCTCATGCTAACACATCAAAAGAATCAGTTGAAAGATACAATAGATGTTGAGGAGACTGAAGATGTGGGTGATCCATTGACGGCCGAAGAACTGGAAGAAAAAGAAAAACTCTTAGAGGAAGGATTTTCTTCATGGAGTCGCAGAGATTTCAATACGTTTATTAGGGCTTGTGAGAAGTATGGGCGAAACGATATTAAAAGTATTGCTTTGGAGATGGAAGGAAAAACAGAAGAAGAAGTTGAGAGATATGCAAATGTCTTTAAAGAGAGATACAAGGAGTTAAATGATTATGATAGAATCATCAAGAACATAGAAAGAGGGGAAGCTAGGATTTCTCGCAAGGATGAAATAATGAAAGCTATCGGCAAGAAACTCGATCGCTACAAAAATCCATGGCTGGAGCTCAAGATCCAGTATGGCCAGAATAAAGGGAAGTTGTACAACGAAGAATGTGATCGTTTCATGATATGCATGGTTCACAAGCTCGGTTACGGGAACTGGGACGAACTGAAAGCAGCATTTCGTACATCACCCTTGTTTCGCTTTGATTGGTTTATCAAGTCGCGAACAACACAAGAACTTGCAAGGAGGTGCGATACCTTAATCCGGTTAGTCGAGAAGGAAAACCAGGAATATGATGAACGGGAAAGACAGGCCCGTAAAGAAAAGAAGCTTGCCAAGAGCATGACGCCATCGAAACGTGCCTTGGCTAGGCAGTCCGAGAGCCCAACTAACCTAAAGAAGCGGAAGCAATTATCTAAGGATGATTATGTGAACTCTGGAAAGAGGAGGAAGTGA 3330 41.95 MAKPSKRQVSSDEAMSNGSSSSEEEEQTNEQINEEEDEEELEAVARSAGSDEDEAAEDSDNDASPVENGEEEDGSNDGDDDKVDISRREKARLKEMQQMKKQKIQDMLDAQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGEHSSSQKKTKGRGRHASKITEEEEDEEYLKEEEDGLSGTGNTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPDERRNIRENLLVAGKFDVCVTSFEMAIKEKSCLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYYYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEAATAELDAKMKKFTEDAIKFKMDESGELPDMNCLVSFCLIIFCFLSNIQGVLSNAYVVLAAAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMLTHQKNQLKDTIDVEETEDVGDPLTAEELEEKEKLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIALEMEGKTEEEVERYANVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFIKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALARQSESPTNLKKRKQLSKDDYVNSGKRRK 1109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 38449 45875 + Cp4.1LG17g00830.1 Cpe17g00005 483323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00005 1109 SUPERFAMILY Homeodomain-like 888 938 IPR009057 -
Cpe17g00005 1109 Coils Coil 93 113 - -
Cpe17g00005 1109 SUPERFAMILY Homeodomain-like 940 1062 IPR009057 -
Cpe17g00005 1109 Coils Coil 1042 1069 - -
Cpe17g00005 1109 MobiDBLite consensus disorder prediction 1087 1109 - -
Cpe17g00005 1109 Gene3D - 199 414 IPR038718 -
Cpe17g00005 1109 MobiDBLite consensus disorder prediction 1057 1109 - -
Cpe17g00005 1109 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 757 1109 - -
Cpe17g00005 1109 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 727 - -
Cpe17g00005 1109 MobiDBLite consensus disorder prediction 9 26 - -
Cpe17g00005 1109 Gene3D - 419 711 IPR027417 -
Cpe17g00005 1109 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 654 IPR001650 -
Cpe17g00005 1109 PANTHER SNF2/RAD54 HELICASE FAMILY 757 1109 - -
Cpe17g00005 1109 PANTHER SNF2/RAD54 HELICASE FAMILY 9 727 - -
Cpe17g00005 1109 MobiDBLite consensus disorder prediction 1 96 - -
Cpe17g00005 1109 Coils Coil 22 42 - -
Cpe17g00005 1109 Gene3D ISWI, HAND domain 786 884 IPR036306 GO:0003677|GO:0006338|GO:0031491
Cpe17g00005 1109 SMART sant 885 934 IPR001005 -
Cpe17g00005 1109 SMART sant 987 1048 IPR001005 -
Cpe17g00005 1109 MobiDBLite consensus disorder prediction 80 96 - -
Cpe17g00005 1109 MobiDBLite consensus disorder prediction 142 186 - -
Cpe17g00005 1109 CDD DEXHc_SMARCA1_SMARCA5 195 415 IPR044754 GO:0005524
Cpe17g00005 1109 Pfam Helicase conserved C-terminal domain 501 613 IPR001650 -
Cpe17g00005 1109 ProSiteProfiles SANT domain profile. 884 936 IPR017884 -
Cpe17g00005 1109 Gene3D iswi atpase 940 972 - -
Cpe17g00005 1109 MobiDBLite consensus disorder prediction 1057 1073 - -
Cpe17g00005 1109 Pfam HAND 798 882 IPR015194 GO:0003677|GO:0006338|GO:0031491
Cpe17g00005 1109 SMART ultradead3 194 386 IPR014001 -
Cpe17g00005 1109 Gene3D - 973 1076 - -
Cpe17g00005 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 413 IPR027417 -
Cpe17g00005 1109 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 375 IPR014001 -
Cpe17g00005 1109 CDD SANT 888 932 IPR001005 -
Cpe17g00005 1109 SMART helicmild6 529 613 IPR001650 -
Cpe17g00005 1109 Pfam SLIDE 942 1052 IPR015195 GO:0003677|GO:0005634|GO:0006338
Cpe17g00005 1109 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 797 887 IPR036306 GO:0003677|GO:0006338|GO:0031491
Cpe17g00005 1109 Gene3D - 885 939 - -
Cpe17g00005 1109 CDD SF2_C_SNF 499 624 - -
Cpe17g00005 1109 MobiDBLite consensus disorder prediction 27 42 - -
Cpe17g00005 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 694 IPR027417 -
Cpe17g00005 1109 MobiDBLite consensus disorder prediction 53 79 - -
Cpe17g00005 1109 Pfam SNF2-related domain 211 478 IPR000330 GO:0005524|GO:0140658
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00005 K11654 SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] - csv:101221495 1959.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00666 Cpe-Chr1:3892982 Cpe17g00005 Cpe-Chr17:38449 1.63E-43 dispersed
Cpe10g00017 Cpe-Chr10:113712 Cpe17g00005 Cpe-Chr17:38449 8.28E-106 dispersed
Cpe14g00559 Cpe-Chr14:3543854 Cpe17g00005 Cpe-Chr17:38449 5.36E-147 dispersed
Cpe15g00089 Cpe-Chr15:662153 Cpe17g00005 Cpe-Chr17:38449 1.24E-78 dispersed
Cpe17g00005 Cpe-Chr17:38449 Cpe19g01203 Cpe-Chr19:8078742 1.22E-113 dispersed
Cpe19g01004 Cpe-Chr19:7024836 Cpe17g00005 Cpe-Chr17:38449 4.05E-13 dispersed
Cpe17g00005 Cpe-Chr17:38449 Cpe17g00093 Cpe-Chr17:551467 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g350 . . . Bda08g00281 . . . Bma05g01060 Cmo08g01181 . . . . . . . . . . . . . . . Cla06g00499 Cam06g0536 Cec06g0536 Cco06g0540 Clacu06g0521 Cmu06g0523 Cre06g1293 . . . . . . Chy11g01479 . . . . . Bpe05g00850 . . . Sed09g0640 . . Cma08g01207 . Car08g01083 . . Cpe17g00005 Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . Lsi09g01406 . . Cme11g01986
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009268 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50762 PF00176 SNF2_N 1.00E-71 CL0023 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00005 Cpe_Chr17 FPKM 11.673976 13.875562 14.910494 16.643417 14.31427 12.05215 14.790818 24.43383 24.610929 24.979225