Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00006 ATGGACGTAGTAGCAAAGATGGCCGGGAAGAAAGCCGTAGTGATCTTTAGCAAGAGCACGTGTTGCATGTGTCACGCAATCGAGAGGCTATTTTACGAGCAAGGAGCGAGCCCGGAGATTCACGAGCTCGATCGGGAGTTAAGAGGGAAGGAAATGGAGATGGCTCTCTCGAGGTTGGGTTGCAGCCCCGCCGTGCCCGTGGTGTTCATCGGCGGAAAGTTCATCGGCTCCGCCAACACCGTGATGACGCTTCATCTCAATGGCTCCCTAAAAAAATTGCTAAAGGAAGCTGGAGCTATATGGCTTTGA 309 52.75 MDVVAKMAGKKAVVIFSKSTCCMCHAIERLFYEQGASPEIHELDRELRGKEMEMALSRLGCSPAVPVVFIGGKFIGSANTVMTLHLNGSLKKLLKEAGAIWL 102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 49419 49727 - Cp4.1LG17g00730.1 Cpe17g00006 483324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00006 102 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Cpe17g00006 102 Pfam Glutaredoxin 13 75 IPR002109 -
Cpe17g00006 102 PANTHER BNAA01G25120D PROTEIN 1 101 - -
Cpe17g00006 102 Gene3D Glutaredoxin 2 101 - -
Cpe17g00006 102 CDD GRX_GRXh_1_2_like 12 93 - -
Cpe17g00006 102 SUPERFAMILY Thioredoxin-like 2 101 IPR036249 -
Cpe17g00006 102 PANTHER GLUTAREDOXIN 1 101 IPR011905 -
Cpe17g00006 102 TIGRFAM GlrX-like_plant: glutaredoxin-like family 4 102 IPR011905 -
Cpe17g00006 102 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Cpe17g00006 102 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Cpe17g00006 102 PRINTS Glutaredoxin signature 72 85 IPR014025 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00006 K03676 grxC, GLRX, GLRX2; glutaredoxin 3 - csv:101221729 181.415
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01378 Cpe17g00006 CCT
Cpe08g00206 Cpe17g00006 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00206 Cpe-Chr8:1394568 Cpe17g00006 Cpe-Chr17:49419 4.07E-53 dispersed
Cpe13g01133 Cpe-Chr13:9026018 Cpe17g00006 Cpe-Chr17:49419 2.53E-37 dispersed
Cpe17g00006 Cpe-Chr17:49419 Cpe17g00928 Cpe-Chr17:7164865 6.96E-38 dispersed
Cpe17g00092 Cpe-Chr17:547549 Cpe17g00006 Cpe-Chr17:49419 2.05E-72 transposed
Cpe12g00965 Cpe-Chr12:8158216 Cpe17g00006 Cpe-Chr17:49419 5.51E-15 wgd
Cpe17g00006 Cpe-Chr17:49419 Cpe03g01378 Cpe-Chr3:11125493 1.23E-53 wgd
Cpe17g00006 Cpe-Chr17:49419 Cpe08g00205 Cpe-Chr8:1388627 3.88E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g348 . . . . . Bpe14g01143 . . Cmo08g01182 Cmo17g00300 Cma06g01476 Cma14g01636 . . Sed12g0853 Cpe08g00206 Cpe03g01378 Bhi01g00966 Tan10g0968 Cmetu11g2490 . . . Lcy11g1439 Cla06g00498 Cam06g0535 Cec06g0535 Cco06g0539 Clacu06g0520 Cmu06g0522 Cre06g1292 Cone14ag0777 . Cone7ag0169 . Lsi05g01513 . Chy11g01480 Cme06g00703 Blo02g00586 Blo07g00185 Bda11g00538 . . Bpe13g00650 . Bma06g01516 Sed09g1206 . Cmo14g01675 Cma08g01208 . . . . Cpe17g00006 Bhi12g02091 Tan06g0870 Cmetu01g1092 Lac12g2384 Hepe03g0121 . Lcy13g0196 . . . . . . . Lsi09g01407 Csa03g01427 Chy06g00667 Cme11g01987
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000678 3 2 1 3 3 3 2 2 3 4 3 3 5 3 3 4 3 7 6 3 3 4 3 3 2 3 4 4 6 1 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00006 Cpe_Chr17 FPKM 22.010302 20.584263 46.718594 44.739048 25.232719 27.548111 26.961447 47.673725 45.145706 44.969784