Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00008 ATGTTAACTAATACTGCTGGAGAAATGAAGCCAACGAGCTTTGAAGCAGATGAAGCAGATTTAGGAGACAACGAGTATGAGTTTATGAGATACGAAACCGTAGAAGAATGTGAATCGGAAGCGCCACTTCGGGACTGGTATGAGCGACCGGTAGATGACGGGCTCAAAGATGTCAGCAAGATCCTCCAGATACCATCTTCCTCTGCCGCGAGGAATGCTATTTGGGCCTTTTCATTGGGCCTCTTTTCTAACTTGATATCGGCTCTGTTCAGAAAGCCCAAGATACCATCTTCCTCTGCCGCGAGGGAGAGAGCGGGTTCTGTTGAGGCTACAGTGACAGCAAATTTGAAAAAAATGGAGGTTCCGAAGGATCAAATCTCCACTCTTATCGACCAAGGACTCTATAGTTCAGCTCAAATGCTGGGTTGCTTTCTTGTTTCATCGCCAGCTGCTAATGCAGAATCCAGTCCTCACCTTAAGTCTGAGAGTTTGGTGCTTCTGGGGGATGCATTATTTCGAGAAAGGGAGTATCGAAGAGCAATTCATACTTACAAGCAAGCCTTGCAATACTATAAGATTATTCCTAAACAAAATTCAACTACTACTAGAGGTTCTTTGCAGTCAAACAGGTCCTCTTCTCCCAATTCTTTTAACGTATCGGCCATTAATGAAAATGAGGTGAAGTTCAAAATCGCGTCGTGTTATTGTGCATTAAGTGATAACAGAGCTGCCCTTGTAGAGATGGAGGGAATTCCAAGTAAAGCAAGAAACTTGCAAATGATTCTTTTGATGGGAAAGCTTTACAGATATGCGAGACATAACCGTGCTGCTATTGCATATTACAAGGAACATTGCCCTTATGTGTTTGAAGCTATTATAGCTTTAGCAGAACTTGGTGTTGCTGCCAAAGATATCATTTCTTTGTTCCCTCAGACTCCAATTAGAAGTGGCAAAACTCCTTTTGATCACCTCGATTCAAATCGCTGGCTGCTACGCTATGTTGAGGCCCAGTGTTGCATTGCTTCCAATGATTACAAAGGTGGTTTGGAGCTGTTTCTGGACTTGTTGCAACGTTTTCCCAATAATATTCACCTGTTACTTGAAATTGCAAAGGTTGAAGCTGTCATAGGAAAAAACGACGAGGCCATCATAAATTTTGAGAAGGCACGATCAATTGATCCATATCTTATAACATGTATGGATGAATATGCAATGATTCTCAAGAAAAAGTCTGATTATTCAATGCTAAACAAGTTAGTCCATGACTTGTTAAATATTGATCCTACAAGACCAGAAGTTTTTGTGGCTCTGTCTGTATTGTGGGAAACGAAAGATGAGAGGGGAGCTTTGACTTATGCTGAAAAGAGCATCCGAACTGATGAAAGGCATATAGCGGGTTTCATCATGAAGGGAAACCTTTTATTAGCTATGAAGCAGCCGGAAGCAGCTGTTAGTGCTTTCAGGAATGCTCAAGAATTGAGACCTGATATTCGTTCATATCAAGGCTTGGTCCATTCCTATCTGGCTCTGTCGAAAATGAAAGAGGCATTATATGCTGCTCGGGAGGCGATGAAAGCGATGCCTCAATCAGCAAAGGCTCTGAAACTAGTTGGAGATGTACATGCTAGTAACTCAGGTGGTAGAGAGAAGGCCAAGAAGTTTTATGAGTCAGCCCTTAGGCTCGAACCCGGTTACCTCGGAGCGGCATTAGCTTTGGCAGAGCTCCATGTTATTGAAGGCCGAAACGGGGATGCTGTGTCCTTACTGGAGAGGTACCTTAAGGACTGGGCTGATGATTCTCTTCACGTAAAACTAGCTCAAGTATTTGCCGCCACAAATATGTTGCAAGAGGCTTTATCTCACTATCAAGCTGCATTAAGGATGAATCCCCAGAATGAAGCTGCCAAAAAAGGTCTAGAGCGCTTAGAGAAACAAATGAAGGGATTAGATCCTGATGCACCTGACGATGATGAAGACAACGAGAGAGTTACATTGTCGAGTTCAACTGGACAAAAGATGTCGATATCGTCGTGGCTGCAGAAGAGTCATTTTTTGTACCGAGATGATTCCATGACTTCACGGTATGCATTTATCTTACCTAATGAAGGAGTAGATCCTGATGCACCTGACGATGATGAAGACAACGAGGTCGATGATGCCGACGGAGACCAAGAAGAAAATGAACTTTTATGA 2193 42.95 MLTNTAGEMKPTSFEADEADLGDNEYEFMRYETVEECESEAPLRDWYERPVDDGLKDVSKILQIPSSSAARNAIWAFSLGLFSNLISALFRKPKIPSSSAARERAGSVEATVTANLKKMEVPKDQISTLIDQGLYSSAQMLGCFLVSSPAANAESSPHLKSESLVLLGDALFREREYRRAIHTYKQALQYYKIIPKQNSTTTRGSLQSNRSSSPNSFNVSAINENEVKFKIASCYCALSDNRAALVEMEGIPSKARNLQMILLMGKLYRYARHNRAAIAYYKEHCPYVFEAIIALAELGVAAKDIISLFPQTPIRSGKTPFDHLDSNRWLLRYVEAQCCIASNDYKGGLELFLDLLQRFPNNIHLLLEIAKVEAVIGKNDEAIINFEKARSIDPYLITCMDEYAMILKKKSDYSMLNKLVHDLLNIDPTRPEVFVALSVLWETKDERGALTYAEKSIRTDERHIAGFIMKGNLLLAMKQPEAAVSAFRNAQELRPDIRSYQGLVHSYLALSKMKEALYAAREAMKAMPQSAKALKLVGDVHASNSGGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYQAALRMNPQNEAAKKGLERLEKQMKGLDPDAPDDDEDNERVTLSSSTGQKMSISSWLQKSHFLYRDDSMTSRYAFILPNEGVDPDAPDDDEDNEVDDADGDQEENELL 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 59317 72599 - Cp4.1LG17g00780.1 Cpe17g00008 483326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00008 730 Pfam Tetratricopeptide repeat 570 632 - -
Cpe17g00008 730 ProSiteProfiles TPR repeat profile. 161 194 IPR019734 GO:0005515
Cpe17g00008 730 Pfam Tetratricopeptide repeat 468 496 IPR019734 GO:0005515
Cpe17g00008 730 SMART tpr_5 329 362 IPR019734 GO:0005515
Cpe17g00008 730 SMART tpr_5 464 497 IPR019734 GO:0005515
Cpe17g00008 730 SMART tpr_5 161 194 IPR019734 GO:0005515
Cpe17g00008 730 SMART tpr_5 531 565 IPR019734 GO:0005515
Cpe17g00008 730 SMART tpr_5 363 396 IPR019734 GO:0005515
Cpe17g00008 730 SMART tpr_5 599 632 IPR019734 GO:0005515
Cpe17g00008 730 SUPERFAMILY TPR-like 522 648 IPR011990 GO:0005515
Cpe17g00008 730 MobiDBLite consensus disorder prediction 697 730 - -
Cpe17g00008 730 MobiDBLite consensus disorder prediction 647 669 - -
Cpe17g00008 730 Pfam Tetratricopeptide repeat 163 188 IPR019734 GO:0005515
Cpe17g00008 730 PANTHER CELL DIVISION CYCLE 16,23,27 122 666 - -
Cpe17g00008 730 SUPERFAMILY TPR-like 162 540 IPR011990 GO:0005515
Cpe17g00008 730 MobiDBLite consensus disorder prediction 705 730 - -
Cpe17g00008 730 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 7 122 666 - -
Cpe17g00008 730 Gene3D Tetratricopeptide repeat domain 123 269 IPR011990 GO:0005515
Cpe17g00008 730 Gene3D Tetratricopeptide repeat domain 321 648 IPR011990 GO:0005515
Cpe17g00008 730 ProSiteProfiles TPR repeat profile. 599 632 IPR019734 GO:0005515
Cpe17g00008 730 SUPERFAMILY TPR-like 161 289 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00008 K03354 APC7, ANAPC7; anaphase-promoting complex subunit 7 - csv:101215365 976.467
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00262 Cpe-Chr12:1752844 Cpe17g00008 Cpe-Chr17:59317 0 dispersed
Cpe17g00008 Cpe-Chr17:59317 Cpe20g00221 Cpe-Chr20:1255450 6.72E-11 dispersed
Cpe17g00008 Cpe-Chr17:59317 Cpe09g01048 Cpe-Chr9:9171665 8.86E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g345 . . . . . . . . Cmo08g01185 Cmo17g00301 . . . . . . . . . . . . . . Cla06g00496 Cam06g0533 Cec06g0533 Cco06g0537 Clacu06g0518 Cmu06g0520 Cre06g1290 . . . Cone4ag0164 . . Chy11g01482 . . Blo07g00184 Bda11g00536 . . Bpe13g00652 . Bma06g01514 Sed04g1816 . . Cma08g01212 Cma17g00313 Car08g01084 Car17g00286 . Cpe17g00008 Bhi12g02089 Tan06g2639 Cmetu11g0405 Lac12g2386 Hepe03g0119 . Lcy13g0194 . . . . . . . Lsi09g01409 . . Cme11g01989
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008189 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00008 Cpe_Chr17 FPKM 0.0 0.555471 3.023019 3.402728 1.419483 1.50504 1.09994 5.326068 3.474023 2.827498