Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00010 ATGAATATCTGTTTCTCTCCTACCTGGCACAGTATGCTGGTGGGGAAAATCATGAAGCATTCGACCCGAGAACCGGCGCGAAATCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGTCTGTTTCTCTCCCACCTGGCACAGTATGCTGGTGGGGAAAATCATGGAGCATTCGACCCGAGAACCGGCGCGAAAGCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGGAGAAACCTGCCCAATTTGTCTCCGAGAATTGGAGGATCGTACCGCCGCCGTGCTTACAACGTGTATCCACGCCTATTGCATAGGGTGTATTCGAAAATGGAGCAATTTGAAGCGAACCTGCCCTCTCTGTAACGCTCAATTCGATTCATGGTTCTGCACAATCAAGCTCTCATCGCGAAGCTTCCGGAAAGAAAGATTGCCAAACTTGAATTGTGCCGACAATCTCAAGATTGGAATCGGATCATCCCGTACCGACGCTCGCAGGATTCTTCAGAGCACAAGGAATGAATTGAGCAGAGATAGACGGTCGGAAAGACCACTGACATGGCGGCGTTCATTTGGCCGGCGAGGGCCGGAATCTGTACCTACTGATGTTATTGCCTGGCGAAAACTTCAATGGCGAGAAAGCATATACGACCGACGTATACAAGCTGTCCCATCTTCGGTCAGATCATGTTTAGTAATGAACTTAACAGTAAGTCATGGAGTCAAAGAAGCAATACTAGAAAGGATTAAACCATGGATACAAAGAGAGTTGGAGGCCATCCTTGGGGACCCAGATCCAACTATAATTGTTCATCTGGTTACCTCACTATTTGTGGCAAGACTTGAAGCTCCTTCCTCACAGCTTAATGCTGAAAATGACTTCCTTTCGCCTTTGCGGCCGTTCCTCTATGAAAAAACTGATTTGTTTTGGCATGAATTAAGCGAGGCCGGGCGGGATTATCTTATTGTTCTTCAAAATTCGGCTTCAATGTCTAAGTTCCTCTGCAAAACCCTACTTCAGGTTCGGCATCTCACCACGATTTCGCCATATTCAAAGCTCCGCTGTGTTCAATCACTCCACTTCAACTACAGCACTGTCGCTTCCGATTCACATTCTTTTACGGTTTCGTATCTCATAAACTCATGCTCGTTGTCTCCTGAATCTGCTTCATCTGCTTCAAAGCTCGTTAGCTTCATTTCTCCTGAAAAACCAGATTTGGTGATCTCTTTCTTCAAGAATCACGGCTTTTCTATTGCTAATATCTCGTTCATTATCTGGAAATACCCCCGGGTTCTGCTATCTAATCCGAATGGAACTCTTTTGCCTAAGCTTGAGTTTCTTTACACCAGAGGTGCTTCGAGTTCCGAA 1395 46.24 MNICFSPTWHSMLVGKIMKHSTREPARNLNGENFVVKVISPAICVCFSPTWHSMLVGKIMEHSTREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRKWSNLKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVPSSVRSCLVMNLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAPSSQLNAENDFLSPLRPFLYEKTDLFWHELSEAGRDYLIVLQNSASMSKFLCKTLLQVRHLTTISPYSKLRCVQSLHFNYSTVASDSHSFTVSYLINSCSLSPESASSASKLVSFISPEKPDLVISFFKNHGFSIANISFIIWKYPRVLLSNPNGTLLPKLEFLYTRGASSSE 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 75337 80119 + Cp4.1LG17g00880.1 Cpe17g00010 483328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00010 465 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TOPORS 80 362 - -
Cpe17g00010 465 SUPERFAMILY RING/U-box 84 137 - -
Cpe17g00010 465 SMART ring_2 90 130 IPR001841 -
Cpe17g00010 465 Gene3D Transcription termination factor 3, mitochondrial 388 465 IPR038538 -
Cpe17g00010 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 192 IPR013083 -
Cpe17g00010 465 Pfam Ring finger domain 89 131 IPR001841 -
Cpe17g00010 465 PANTHER TOPOISOMERASE I-BINDING, ARGININE/SERINE-RICH A-RELATED 80 362 - -
Cpe17g00010 465 ProSiteProfiles Zinc finger RING-type profile. 90 131 IPR001841 -
Cpe17g00010 465 Pfam mTERF 417 465 IPR003690 GO:0003690|GO:0006355
Cpe17g00010 465 ProSitePatterns Zinc finger RING-type signature. 108 117 IPR017907 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00010 - - - bhj:120067939 454.521
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00010 Cpe-Chr17:75337 Cpe11g00454 Cpe-Chr11:2562752 8.43E-06 dispersed
Cpe12g00960 Cpe-Chr12:8131523 Cpe17g00010 Cpe-Chr17:75337 6.63E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g344 . . . . . . . . Cmo08g01187 . . . . . . . . . . . . . . . Cla06g00495 Cam06g0532 Cec06g0532 Cco06g0536 Clacu06g0517 Cmu06g0519 Cre06g1289 . . Cone7ag0167 Cone4ag0163 . . Chy11g01483 . . . . . . . . . Sed04g1815 . . Cma08g01213 . Car08g01085 . . Cpe17g00010 Bhi12g02088 Tan06g2640 Cmetu11g2206 . Hepe03g0118 . Lcy13g0193 . . . . . . . Lsi09g01410 . . Cme11g01990
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011367 0 2 0 0 0 1 1 1 1 1 1 1 1 1 0 2 1 2 1 1 1 1 1 1 1 1 1 2 2 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50763 PF02536 mTERF 1.20E-05 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00010 Cpe_Chr17 FPKM 0.920875 1.286731 5.919797 4.530741 2.16528 1.995288 2.826945 4.62831 5.813059 5.668961