Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00012 ATGATTGTTGGAACTAGGGTTTTTGGTTCACATCTAATGGTGGGCTCTATGGAGCCAATGATGATGATGAAGGATTCCATTGGCATGGAAGATGGCGAAGCTTCTTGTTATTACAAGGAGAGTGGCCGTGATGTTGACCCTGATATTACTCTCTCTTACATTGTAAGGGATGAGAAGATTGAGCGTTTTCTTGGTCATTTCCAAAAGGACTTCGAAAGGGGAGTTTCAGCTGAAAACTTAGGGTCAAAGTTTGGTGGTTATGGCTCATTTTTGCCTACATACGAACACCGTCCTTCCATTTTGCCTCACCAGAGTAATCAACAAAGAGAATGCAAGGCAGCACCATCTCCGGATAATGTGCTCTTGAAGGGCTCTTCTCAGAATCCTAAAGTTCCACCACCTGGGAGGCCAGAAGCTGTTGTCTGCAATACTATTCCCCCTCGCAATGCAAGGGAAACTTCTGGCAGTATCTCTGGCAGAGTAGATTCATGCTTGCCAGCTACTAAAGTGACCAATAGTTGCCCTTCGAAAGATGAAGCTTCAATCAGCTTAGGTTGTTCGATGGACAAAAGATCGCTCAAACTTCGAATTAAAGTTGGTTCTAACAGTACTGGATTGAAAAATGCAGCAATATACAGTGGCCTTGGACTTGATGACTCTCCACCTTCATCAGAAAAAACCTCTGACGTAAATGAAGGGATGCTGCCCATATCTCAATGCCCACCAGATGAGTCTCTGACTAAGATAATTGAGGAGATGACTGCTTTCCCAGTGCCCGATGGAGCATTGATATCACCTCTTCACGAGAGCCTACTTGGGTTGTCAAGAAAAGAAAAACCACTTCAAGAAACCAAATCCGTGCTTTTCCCGAAGGATAAAAAAGATGGTTTGGCGAAGCTAGCCGATGAGACCAACAGTACATTGGTTGAGAATAAGAAAAAGGAGGTGAGGCATATAGAAAGGCATGTCAGTTATAAGAACGAAGTTTGTGCTTCTCTTGGGAAGGAGACGACTACTCTTGTGAATGGAAAATTAGAAAATGAGGCTTTTGAAAGCAAGAATTTCGTTTCTAATAAGCTGCCATTCGAACTTGTTTCCGAGGGTATGATGCCCAGTGCTTACTTGGACCCACAAAAGAAGAAGCTTTCTTGTAAAACTACACTGCACAAAGCAGAAACAGACACAGACAAAGGATCAATTAAGAAAGAAAAGTCTGAAATTGTTGGCAAGAAGAAATTAGAAGTGCCACAGACTGCTAGTAGGAAAACAGCTGGTTCAGTCGAGAAAGGCTTTGAGTTTAGGAGTAAAGCATCAAAAATTAGAAAGGACACTGATGCTGACACTCCTGAATCAGAAAATAGAAGGCACAGCAATCAGAAAGCAGGAGCGATCAATAGAGGTTCTTTTAACAGCTCGGGGCTAGATGGAAACCGTAAAAGTAAGGGTGTAATTGATAGGGCTTCTGGTGACTTGCGAAAGGTCAAAAGATCAGATGACAGTGAAAACAAAACGTCCAAGTCCTCGATGGTGGTTGAACCAGCAGTGGTGGCTCCTGTCGATGAATGGGTATGCTGTGACAGTTGCCAAAAGTGGCGCCTTTTGCCCTTTGGGAAAAAGCCCAAACTTCCTGAAAAATGGTTGTGCAGCATGCTTAATTGGCTCCCTGGGATGAACCGATGTGACATTAGCGAGGAGGAGACAACGGAGAAGCTTTATGCTTTCCCTGGGATGAACCGATGTGACATTAGTGAGGAGGAGACAACGGAGAAGCTTTATGCTTTGTACCAGCTACCATTGCCCGGGAGTGGAGATGTTTCGCAGAAACATGCCAATGGACTAACATCAGGTGATACTTCAAAGCAAGGCAAAAGGAAAGATACTTCGAAGGAAATACAAAATCCACTGGAGTTGAGGAAAAATAAAAGTCTTAATGGTTACAGTAATCATCCGGATCAATTGAGAAATTCAAGGGATCAATCTTCTAGTGACCTGCACAACTTGGTAGAGGGAAAGAACAGAGGTCAGCTGAAAGAAAAATCCATTGATAGAGGTGGGGAAGTTATGCTGAAGCACAGTAACGTTGGTTTAAAGATGCACAACAAATTGAACGTGGACAATGAAATGAAAATTTCATCGAAGAAATGGGGAGAAACAGCTGGTATCTCCTCTGTTGATCAAGTTAATGATAAAAGTGCTTGCACAAACAAAAGGAAACTGAAGGATTGTCAGGATGTTCAAAAATCTCATAACAGTTCACTTCATGAACCTGTGCTATCAAAGGAAGAAACTTGTGAAAGATTGAATAAGAAAAAGAAATCCAACGTGTCAAATGGTTTTGCTGGTGGTACGGAAGAAATCAGCAAGGATAAGGAACCGAAAATGCCAAACAATAAGATTACTCATAGACAAACTTCTGTTGGTACGGAGTTACCAAAGAGGAATTTAGGTGTTCGACAAGTTTCAGTGGCAGCTAACTCTACCTCATCAAATGTTTCTCAACCTCATTTAACTAAAGCCAAATTTTCAGTGAAAGTGTCTCCTGTTGTATCAGTTTCATCATCTCCCATTAAGACATCCAGCCTCGATCGGCCTAGGTTTTGCAATAATCATATAGGCGACAGTGTGGAACCGAGCCACAAGAAACGCAAGAACGTGTTTCCTGATAAGGAGTTTTGCACAGAGAATAAGGTTCTACGTCCGGCTTCTAATGAGAAGGACAAAAGTATCTCGTCTGATGTGGAGCTTGATAAGTTGAAGGCTTCTGATGGAATGTCCAAGCGCTCAAAGAAGAGCACGACATATGTGCCAGAGGTTGATTCCTACCACGATGCAGCTTGTCCAAATGGGACAGGTGAAATTGAAGGAACTATTCCTCAAAAGCATGGCATAAAGTTAACTAAAAAAGAGACGATTCATGTCGGTGCTGAAGGATTGAAATCCCCTCGAAACCTCAAGGGTTATGAAGATCAGAGGTCAAATAGAGGAGTTGGACTTCAGATGAAGCGAAGTCGGGATTCTGAAGCAGGGATTAAAGGTGTTCTGAGAACAGTAGAAAGAGGTGAATGCAAAGAAGAACCGTCATGTCTTGGTGGTGACTCTTTACGAGTTTCTTCTAGGGCGGGCAATTCTCATCAGCTTTCCGCCGATGCCCCCAAAAGTGATGATGCAGTAGAGTCGAAGGCATTAAAAGAACGAACGAAATCCTCCGATCAGACTGCATCTAATACATTGAAAGAAGCCAAAAAACTTAAAGACAAGGCAGATAATCTCAAGGGTGCTGGATTCGTTTTTGAAAGTAATGAGCTCTACTTTCAATCTGCTCTGAAGTATCTTCATGGAGCATTCCTTTTAGAGACTCCTAACAATGCGACCGACAAGCATGGCGATATGACTCACATGCAGTTCTATGGCATTGCAGCCGAACTTTGCGAGATCTGTGCCCTTGAATTTCAAGGTCGCCGAGAAATGGTTGCAGCCGCATTGGCTTTTAAATGTATCGAAGTAGCATACTTGCGGATAGTTTACCATAAACACTCAAGTGTCAATGGAGATCGCCTCGAGATGCAATCGTTGTTTCGTACAATTGTGCAAGGTGAATCTCCATCTTCTTCTGCATCAGATGTCGATAACTTCAGCAATCAAGGAGTTATTGACAAGATTACCTCTGACAGAGTTGGTGGAAGTCACATCTGGAATTTTGGAAACTGCACGAGTTTTGCTCGAGTCCTCGACTTTGCACGCAATATGAATTCAGCCATGGAGGCGTCGGCGAAATCTCAAAGCGCCTTCGTGGCAGCAGCTAGTTCATGTGCCACTGAAAGAAAACATGTGGACTATGTTGCATCAGTTAAAAAGGTGATTGATTTCAGTTTCCAAGACGTCGGGGAACTCGTGGAGTTGGTTCGGGTTGCTATGCAGGCAGTAACTCAGCCAAGTTTTTGCAGTGGTAGAGATTAG 3957 43.06 MIVGTRVFGSHLMVGSMEPMMMMKDSIGMEDGEASCYYKESGRDVDPDITLSYIVRDEKIERFLGHFQKDFERGVSAENLGSKFGGYGSFLPTYEHRPSILPHQSNQQRECKAAPSPDNVLLKGSSQNPKVPPPGRPEAVVCNTIPPRNARETSGSISGRVDSCLPATKVTNSCPSKDEASISLGCSMDKRSLKLRIKVGSNSTGLKNAAIYSGLGLDDSPPSSEKTSDVNEGMLPISQCPPDESLTKIIEEMTAFPVPDGALISPLHESLLGLSRKEKPLQETKSVLFPKDKKDGLAKLADETNSTLVENKKKEVRHIERHVSYKNEVCASLGKETTTLVNGKLENEAFESKNFVSNKLPFELVSEGMMPSAYLDPQKKKLSCKTTLHKAETDTDKGSIKKEKSEIVGKKKLEVPQTASRKTAGSVEKGFEFRSKASKIRKDTDADTPESENRRHSNQKAGAINRGSFNSSGLDGNRKSKGVIDRASGDLRKVKRSDDSENKTSKSSMVVEPAVVAPVDEWVCCDSCQKWRLLPFGKKPKLPEKWLCSMLNWLPGMNRCDISEEETTEKLYAFPGMNRCDISEEETTEKLYALYQLPLPGSGDVSQKHANGLTSGDTSKQGKRKDTSKEIQNPLELRKNKSLNGYSNHPDQLRNSRDQSSSDLHNLVEGKNRGQLKEKSIDRGGEVMLKHSNVGLKMHNKLNVDNEMKISSKKWGETAGISSVDQVNDKSACTNKRKLKDCQDVQKSHNSSLHEPVLSKEETCERLNKKKKSNVSNGFAGGTEEISKDKEPKMPNNKITHRQTSVGTELPKRNLGVRQVSVAANSTSSNVSQPHLTKAKFSVKVSPVVSVSSSPIKTSSLDRPRFCNNHIGDSVEPSHKKRKNVFPDKEFCTENKVLRPASNEKDKSISSDVELDKLKASDGMSKRSKKSTTYVPEVDSYHDAACPNGTGEIEGTIPQKHGIKLTKKETIHVGAEGLKSPRNLKGYEDQRSNRGVGLQMKRSRDSEAGIKGVLRTVERGECKEEPSCLGGDSLRVSSRAGNSHQLSADAPKSDDAVESKALKERTKSSDQTASNTLKEAKKLKDKADNLKGAGFVFESNELYFQSALKYLHGAFLLETPNNATDKHGDMTHMQFYGIAAELCEICALEFQGRREMVAAALAFKCIEVAYLRIVYHKHSSVNGDRLEMQSLFRTIVQGESPSSSASDVDNFSNQGVIDKITSDRVGGSHIWNFGNCTSFARVLDFARNMNSAMEASAKSQSAFVAAASSCATERKHVDYVASVKKVIDFSFQDVGELVELVRVAMQAVTQPSFCSGRD 1318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 94473 101403 + Cp4.1LG17g00810.1 Cpe17g00012 483330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00012 1318 MobiDBLite consensus disorder prediction 460 477 - -
Cpe17g00012 1318 MobiDBLite consensus disorder prediction 411 509 - -
Cpe17g00012 1318 MobiDBLite consensus disorder prediction 998 1012 - -
Cpe17g00012 1318 PANTHER CW-TYPE ZINC-FINGER PROTEIN 575 1312 - -
Cpe17g00012 1318 PANTHER CW-TYPE ZINC-FINGER PROTEIN 22 365 - -
Cpe17g00012 1318 PANTHER CW-TYPE ZINC-FINGER PROTEIN 378 573 - -
Cpe17g00012 1318 MobiDBLite consensus disorder prediction 427 459 - -
Cpe17g00012 1318 ProSiteProfiles Zinc finger CW-type profile. 516 568 IPR011124 GO:0008270
Cpe17g00012 1318 Pfam CW-type Zinc Finger 521 566 IPR011124 GO:0008270
Cpe17g00012 1318 MobiDBLite consensus disorder prediction 977 1012 - -
Cpe17g00012 1318 PANTHER CW-TYPE ZINC FINGER 575 1312 - -
Cpe17g00012 1318 PANTHER CW-TYPE ZINC FINGER 22 365 - -
Cpe17g00012 1318 PANTHER CW-TYPE ZINC FINGER 378 573 - -
Cpe17g00012 1318 MobiDBLite consensus disorder prediction 740 814 - -
Cpe17g00012 1318 MobiDBLite consensus disorder prediction 740 772 - -
Cpe17g00012 1318 MobiDBLite consensus disorder prediction 637 668 - -
Cpe17g00012 1318 Coils Coil 1073 1093 - -
Cpe17g00012 1318 MobiDBLite consensus disorder prediction 619 636 - -
Cpe17g00012 1318 MobiDBLite consensus disorder prediction 603 679 - -
Cpe17g00012 1318 MobiDBLite consensus disorder prediction 1051 1067 - -
Cpe17g00012 1318 MobiDBLite consensus disorder prediction 479 505 - -
Cpe17g00012 1318 MobiDBLite consensus disorder prediction 1024 1077 - -
Cpe17g00012 1318 Gene3D - 511 571 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00012 - - - cmax:111494554 2401.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00266 Cpe17g00012 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00012 Cpe-Chr17:94473 Cpe17g00802 Cpe-Chr17:6276258 2.13E-23 dispersed
Cpe12g00266 Cpe-Chr12:1770247 Cpe17g00012 Cpe-Chr17:94473 0 wgd
Cpe12g00959 Cpe-Chr12:8118449 Cpe17g00012 Cpe-Chr17:94473 7.75E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g330 . . . . . . . Bma05g01045 Cmo08g01190 Cmo17g00302 . . . . . . . . . . . . . . Cla06g00492 Cam06g0529 Cec06g0529 Cco06g0533 Clacu06g0513 Cmu06g0515 Cre06g1286 . . Cone7ag0159 Cone4ag0157 . . Chy11g01485 . . . . . . . . . Sed09g1215 . . Cma08g01217 Cma17g00314 Car08g01090 Car17g00288 Cpe12g00266 Cpe17g00012 Bhi12g02083 Tan06g0860 Cmetu01g0223 Lac12g2393 Hepe03g0115 . Lcy13g0188 . . . . . . . Lsi09g01415 . . Cme11g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003760 1 2 1 2 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 2 3 1 1 2 3 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00012 Cpe_Chr17 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0