Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00013 ATGTTGAAACGAAGTCTTCCTTTTGCCCTCAACGAACGGCCGCCTTTGCAAACCATTGAAAATCTCAGTCACCATCTTCGAAGCTGCAAGGATTTGATATCTTCAACCTCCATTCACTCCATAGCCCTTAAGCTTGGATTCTTGAACCAAACTATCACCGCCAACCATCTCATCAATTGCTATGTCAGATTCCGTAGAGTTGCAATTGCACACCAACTGTTCGACGAAATGCCTACCCGAAATGTTGTCTCATGGACCTCACTTATGGCAGGATATGTCGACGACGGTCGACCGAGTCTCGCTCTATCACTGTTCGGGGCAATGTCGAGAACCTCGGTTATGCCCAACGACTTCACTTTCGCAACCGCAATCAAGGCCTGCTCGATCCTGTCGAATTTAAGAGACGGTGAAAAATTCCATGCCTGTATGGAGATTTTTGGTTATGGAGGGAACGTTGTGGTGTGTTCTTCGCTTATTGATATGTATGGGAAGTGTAACGATGTTATTCGAGCCAGGAGAGTCTTTGATTCCATGTCTTGCAAGAACATTGTTTCTTGGACTTCAATGATCGCTGCTTATGCTCAGAACGCACATGGCGACGATGCGTTAAAACTATTTAGGGAGTTCGCTCGAGTTGGGAACATCCAAATCAATNGCAAGAACATTGTTTCTTGGACTTCAATGATCGCTGCTTATGCTCAGAACGCACATGGCGACGATGCATTAAAACTATTTAGGGAGTTCGGTAGCTCGACTTGGGAACGTCCAAATCATTNTTCAATGATCGCTGCTTATGCTCAGAACGCACATGGCGACGATGCGTTAAAACTATTTAGGGAGTTCGGTAGCTCGAGTTGGGAACGTCCAAATCAATTCATGTTGGCTAGTGTGATTAGTGCTTGTGCATGCTTGGGCAGCAAAGTATGGACTTGGGAGACAGTCCCTNTGGTTGATATGTATGCTAAATGTGGGAGTCTTGAGTATTCTGGTAGGGTCTTTAAAAGAATTTTGAACCCTTGTGTTATTTCTTATACTTCAATGATTGTGAGCACAGCAAAGTATGGACTTGGGAGACAGTCCCTTGAACTCTTTGAAGAAATGGTGAGAAAAGGGTTGAAGCCTAACCATGTCACTTTTGTTGGTGTCTTGCATGCTTGTAGCCATTCAGGGCTTCCTGATGAGGGCCTTCATTATTTGAATTCCATGTATGAGAAACATGGGATAATGCCTGAGACTAAGCATTATACGTGTGTCGTCGACATGCTAGCTCGAGCAGGCGAGTTAGATAAAGCATACCAGCTAGCAAAATCCATGAAGGCAATGCCTGATGACGACCAGGCG 1341 44.82 MLKRSLPFALNERPPLQTIENLSHHLRSCKDLISSTSIHSIALKLGFLNQTITANHLINCYVRFRRVAIAHQLFDEMPTRNVVSWTSLMAGYVDDGRPSLALSLFGAMSRTSVMPNDFTFATAIKACSILSNLRDGEKFHACMEIFGYGGNVVVCSSLIDMYGKCNDVIRARRVFDSMSCKNIVSWTSMIAAYAQNAHGDDALKLFREFARVGNIQINXKNIVSWTSMIAAYAQNAHGDDALKLFREFGSSTWERPNHXSMIAAYAQNAHGDDALKLFREFGSSSWERPNQFMLASVISACACLGSKVWTWETVPXVDMYAKCGSLEYSGRVFKRILNPCVISYTSMIVSTAKYGLGRQSLELFEEMVRKGLKPNHVTFVGVLHACSHSGLPDEGLHYLNSMYEKHGIMPETKHYTCVVDMLARAGELDKAYQLAKSMKAMPDDDQA 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 103500 105054 - Cp4.1LG17g00900.1 Cpe17g00013 483331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00013 447 Pfam PPR repeat 184 210 IPR002885 -
Cpe17g00013 447 Pfam PPR repeat 223 247 IPR002885 -
Cpe17g00013 447 Pfam PPR repeat 153 183 IPR002885 -
Cpe17g00013 447 Pfam PPR repeat 260 280 IPR002885 -
Cpe17g00013 447 Pfam PPR repeat 414 439 IPR002885 -
Cpe17g00013 447 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Cpe17g00013 447 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 218 258 - -
Cpe17g00013 447 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 20 211 - -
Cpe17g00013 447 TIGRFAM PPR: pentatricopeptide repeat domain 223 248 IPR002885 -
Cpe17g00013 447 TIGRFAM PPR: pentatricopeptide repeat domain 53 82 IPR002885 -
Cpe17g00013 447 TIGRFAM PPR: pentatricopeptide repeat domain 415 440 IPR002885 -
Cpe17g00013 447 TIGRFAM PPR: pentatricopeptide repeat domain 184 209 IPR002885 -
Cpe17g00013 447 TIGRFAM PPR: pentatricopeptide repeat domain 342 375 IPR002885 -
Cpe17g00013 447 TIGRFAM PPR: pentatricopeptide repeat domain 153 184 IPR002885 -
Cpe17g00013 447 TIGRFAM PPR: pentatricopeptide repeat domain 83 116 IPR002885 -
Cpe17g00013 447 PANTHER OS12G0163600 PROTEIN 20 211 - -
Cpe17g00013 447 Gene3D Tetratricopeptide repeat domain 311 445 IPR011990 GO:0005515
Cpe17g00013 447 PANTHER OS12G0163600 PROTEIN 218 258 - -
Cpe17g00013 447 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Cpe17g00013 447 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Cpe17g00013 447 Pfam PPR repeat family 80 127 IPR002885 -
Cpe17g00013 447 Pfam PPR repeat family 339 387 IPR002885 -
Cpe17g00013 447 PANTHER OS12G0163600 PROTEIN 260 442 - -
Cpe17g00013 447 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Cpe17g00013 447 Gene3D Tetratricopeptide repeat domain 17 131 IPR011990 GO:0005515
Cpe17g00013 447 Gene3D Tetratricopeptide repeat domain 132 218 IPR011990 GO:0005515
Cpe17g00013 447 Gene3D Tetratricopeptide repeat domain 219 310 IPR011990 GO:0005515
Cpe17g00013 447 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 260 442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00013 - - - csin:114295715 411.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00866 Cpe-Chr10:4884815 Cpe17g00013 Cpe-Chr17:103500 1.25E-09 dispersed
Cpe17g00013 Cpe-Chr17:103500 Cpe03g00167 Cpe-Chr3:835756 7.21E-12 dispersed
Cpe17g00013 Cpe-Chr17:103500 Cpe10g00625 Cpe-Chr10:3620218 1.83E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g329 . Blo12g00020 . . Bpe04g01129 . . . Cmo08g01191 . . . . . . . . . . . . . . . Cla06g00491 . . . . . . . . . Cone4ag0156 . . Chy11g01486 . . . . . . . . . . . . Cma08g01218 . Car08g01091 . . Cpe17g00013 Bhi12g02081 . . . Hepe03g0114 . Lcy13g0186 . . . . . . . Lsi09g01416 . . Cme11g01993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011153 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 0 1 1 0 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00013 Cpe_Chr17 FPKM 5.135185 7.7007 9.984064 9.278199 10.281435 7.846288 6.008839 8.953705 7.580197 9.234341