Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00025 ATGGAGGGCTCTTTAGGGCAAAATCACGAGCATCAGGAGTTCACTTTGGTTTCGATTTCTAAGCTTCCTTCTTCGACTTCGACGTCTTCTTCGTCCACTTCGTCGACGCCGGTGGTTGCTCGATTCGGAGGCGAGTCCGGCGCGGCGGAGCTTCGGTTCCGGCAGGAGGCCGATTCCGATGACTTAGCGTTCGATCTTCGGACTTCTCAGATATTTCGGTTAGGCTCTGTTCAGTCAGTGTGCATATCCAAAGACGATACGAGTAAAGAGAAATCACATTCCAGAGGAGTTACCATTCAATTTAGGAACGAGGAAGAGAGCAGTGCATTTCATTCTGCTTTTGATAAGAGGAAGGAGGATGATATTGTCCAAGGCACCCATTTACCAAATGGCACCATTTCTTCCTTGAAAAGCAAGTTTGATGATAAAATAGAATCATCTTCCGCTAAGATGTACTTCCACTACTATGGGCAACTTTTACATCAACAAAATATGATGCAGGATTATGTGAGGACAGGAACATATTACGCAGCTGTGATGGAAAATCGTGCTGACTTCACAGGTCGTGTGGTCGTCGATGTCGGTGCTGGTAGTGGTATTTTGTCTTTATTTGCTGCTCAGGCCGGTGCAAAACATGTTTATGCTGTGGAAGCATCTGAAATGGCTGAGTATGCTCGTGTGTTAATTGCTGGGAACCCTGCCTTGAGTCAACGAATCACTGTGATTAAAGGCAAAGTCGAGGATGTTGAATTGCCCGAGAAAGCAGACATTTTAATATCAGAGCCAATGGGCACCCTATTGGTCAATGAAAGAATGCTGGAATCTTATGTGATTGCTAGGGATCGTTTTTTGCACCAAAATGGAAAGATGTTCCCAACTATAGGGAGGATTCACATGGCACCTTTCAGCGATGAATATCTATTTGTTGAAGTAGCTAATAAGGCTCTCTTTTGGCAGCAACAAAACTATTATGGTGTTGATTTGACAGCCTTGTACGGGTCAGCATTTCAAGGCTATTTTTCTCAGCCGGTGGTGGATGCTTTTGATTCAAGATTATTGGTGGCCCCTTCAATATCTCATGTTTTGGACTTCACAAATATTAAGGAAGAGGAACTATATGACATTGATATTCCTTTAAAATTCGTTGCTACTGTGGGTGCCAGAGTGCATGGATTGGCCTGCTGGTTTGATGTATTATTTAATGGCAGTACTGTGCAGAGGTGGCTTACCACTGCCCCTGGTGCTCCGACGACCCATTGGTACCAATTACGTTGCGTCCTCTCTCAACCGCTCTACGTCATGGCGGGACAGGAAATTACTGGCAGACTTCACATGGTCGCTCACAGTGCTCAGAGTTACACAATTCATTTGACTCTATCAGCCAAAATGTGGGGTCCTGGTGCCGAGCAAGGAGGAATACTTCAGTCGTCGTCGTGCAAACTTGACTTGAAAGAGCCCTACTATAGAATGTCGCAACCACAAGCCTATCCCGTGGTCCAAGATCAGCAACAACATCAGCTGATTCCGACACAGGACTTATCGATTCAACCCAAGGATTTAGAAGATGCTGATCTGATGCTACATGCATCACCGAACTCGGGGGCTCCGCTGAATTCATTGATATAA 1626 45.39 MEGSLGQNHEHQEFTLVSISKLPSSTSTSSSSTSSTPVVARFGGESGAAELRFRQEADSDDLAFDLRTSQIFRLGSVQSVCISKDDTSKEKSHSRGVTIQFRNEEESSAFHSAFDKRKEDDIVQGTHLPNGTISSLKSKFDDKIESSSAKMYFHYYGQLLHQQNMMQDYVRTGTYYAAVMENRADFTGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARVLIAGNPALSQRITVIKGKVEDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLHQNGKMFPTIGRIHMAPFSDEYLFVEVANKALFWQQQNYYGVDLTALYGSAFQGYFSQPVVDAFDSRLLVAPSISHVLDFTNIKEEELYDIDIPLKFVATVGARVHGLACWFDVLFNGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGRLHMVAHSAQSYTIHLTLSAKMWGPGAEQGGILQSSSCKLDLKEPYYRMSQPQAYPVVQDQQQHQLIPTQDLSIQPKDLEDADLMLHASPNSGAPLNSLI 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 166662 172454 + Cp4.1LG17g00680.1 Cpe17g00025 483343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00025 541 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 7 500 IPR025799 GO:0016274|GO:0018216
Cpe17g00025 541 CDD AdoMet_MTases 191 299 - -
Cpe17g00025 541 Gene3D - 294 502 - -
Cpe17g00025 541 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 145 460 IPR025799 GO:0016274|GO:0018216
Cpe17g00025 541 Gene3D Vaccinia Virus protein VP39 132 292 IPR029063 -
Cpe17g00025 541 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 155 466 IPR029063 -
Cpe17g00025 541 Pfam Ribosomal protein L11 methyltransferase (PrmA) 187 260 - -
Cpe17g00025 541 PANTHER HISTONE-ARGININE METHYLTRANSFERASE 1.4-RELATED 7 500 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00025 K05931 CARM1, PRMT4; type I protein arginine methyltransferase [EC:2.1.1.319] - csv:101217747 968.378
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00275 Cpe-Chr12:1833926 Cpe17g00025 Cpe-Chr17:166662 0 dispersed
Cpe17g00025 Cpe-Chr17:166662 Cpe18g00373 Cpe-Chr18:5066541 8.75E-53 dispersed
Cpe17g00024 Cpe-Chr17:165177 Cpe17g00025 Cpe-Chr17:166662 4.95E-36 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01519 . . . . . . Bpe05g00765 . . . . . . . . . . . Cpe17g00025 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005574 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00025 Cpe_Chr17 FPKM 1.010465 1.047011 1.995779 1.680873 0.996218 0.0 0.760969 2.994974 3.89315 3.7914