Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00043 ATGGTGGCGAAGAGCCAGCAAAACAGTAAACCCCAAAACAGGAAGCAAATTTCAGGCAACAAGAGTTCCTCTCATGGCTCCGCTTCGAAGAAACCGAAGTTCGTAAATGACAAGCACTCGAAGTCCCATGGCCTGGGAACTGTTGGTAAACCCTTCAAATCGAAGGTTGAAAAATCAGAAGCTAAAAAGGAGCCAATTACGAAGCGAGAACATCGCCTCCAAGCTAAGGAACTTGCAGAGGCTAGGAAGAAGAAAAGGAAACGACATTATGATTTGGAACATGAGCTCGCACATCTATGGGAGAAAATGAGGGTTCGAAATATCACCAAAGAAGATAGATCCAAATGGGTAAGTAAAGCATTAGAAAACATGAAGGGGAAGATCCCTGAAATTGCAGGTTCCCATGTGTCGTCTCGTGTGCTTCAGACTTGTGTTAAACACTGCACAGATGCCGAGAGAGAGGCAGTGTTTGAGGAACTTAAGCCTCATTTTCTCACTCTTGCTTGCAACACTTACGCAGTTCATCTAGTGAAGAAAATGTTAGATAATGCCTCGAAAAAGCAGCTGGCTGGGTTTATCTCCTCTCTACATGGCCATGTAGCTTCTCTTCTTCGTCACATGGTTGGATCTTTAGTTGTTGAACACGCATACCATTTAGCGAATGCAGCTCAGAAACAAACACTTCTATTGGAACTTTATTCGGTGGAACTCCAGCTATTTAAGGATCTCGTCTCGATGAAAGAAAGCAGGCTAGTGGATGTAATTTCAAAATTGGACATTAAAAAAGCTTCGGTCTCGCGACACATGACATCAGTAATTCAACCTATTTTGGAAAAGGGGATAGTTGACCACTCTATTATACATAGGGTTCTAATGGAATACTTTACCATTGCNATTCTGATGGAATACTTTACCATTGCTGATAAGACATCTGCCGCAGATGTAATCCAACATTTGTCCAGTTCACTTCTTGTTCGAATGATTCACACTAAAGATGGATCGAGGATTGGTGTACTTTGCATAAAACATGGGAGTGCAAAGGAAAGAAAGAAAATCGTCAAGGGAATGAAAGGCCATGTGAAGAAGATAGCACACGAACAATATGCGGTTATGGTTCTTGTGTCCATTATCTCGGTTGTCGATGATACAAAGCTGATTAGGAAGATTATTATTAACGAGCTCGAGAAAGATTTGAAGGAGCTTATTTTGGATAAGAATGGAAGACGTGTAGTACTGCAACTACTGCGTCCCAATTGTTCGCGCTACTTTAGTCCCGATGATCTTGCTTCTTTAAATTTATCAATACCTTCTCTTTGCAACAAGTCCGAGTCGGGAGTCGATAGAGCAGAAGAGAAGGCTGATAGTGACATGGGCGAAACGGAAGGTGAGGAGGTTGATGGAGGCGAGGTTTCTGCCGAGGGCTCTGAAGCTGTAGAGGGTGGTAAAAAAGATCCTCTTATCCGAAGACATGAGTTGTTGGTGGATAGTGGGCTTGCCGAGAAGCTTGTCGATGTATGCGTCAACAATGCTGGGGAAATACTAAGGTCAAATTTCGGCCGAGAAGTAATGTACGAGGTTGCAACCGGGGGTGCCGATGGCGTTCTTCAATCGAAATTGGGAGAAAAGCTGAGTGGTTTGTATGAAGCTATAGCTTCACTTGCAGCAGAGCCTAAATCTGAAGACGCAGCCGCAGGAGATGAGCATGTCCTTGAAAATTTCCACTCTAGTAGGACTATAAGAAAGCTAATCTTGGACTGCCCTGCCTTTGCCCTCACTTTGTGGACCACAGCACTTGAAGGGAAATCCAAATTGTGGGCTCAAGGTCACAGTTGTAAGATAGTCCAAGCTTTCCTGGAATCCACGGACTCAAAGGTACGTGAAATTTCAAGAGTAGAGTTACAGTCCTTGATTGACGAAGGGCTACTCAAAATCCCAGACACCAAGCAGTCTGCCGACAAAAGCTGA 1965 43.77 MVAKSQQNSKPQNRKQISGNKSSSHGSASKKPKFVNDKHSKSHGLGTVGKPFKSKVEKSEAKKEPITKREHRLQAKELAEARKKKRKRHYDLEHELAHLWEKMRVRNITKEDRSKWVSKALENMKGKIPEIAGSHVSSRVLQTCVKHCTDAEREAVFEELKPHFLTLACNTYAVHLVKKMLDNASKKQLAGFISSLHGHVASLLRHMVGSLVVEHAYHLANAAQKQTLLLELYSVELQLFKDLVSMKESRLVDVISKLDIKKASVSRHMTSVIQPILEKGIVDHSIIHRVLMEYFTIAILMEYFTIADKTSAADVIQHLSSSLLVRMIHTKDGSRIGVLCIKHGSAKERKKIVKGMKGHVKKIAHEQYAVMVLVSIISVVDDTKLIRKIIINELEKDLKELILDKNGRRVVLQLLRPNCSRYFSPDDLASLNLSIPSLCNKSESGVDRAEEKADSDMGETEGEEVDGGEVSAEGSEAVEGGKKDPLIRRHELLVDSGLAEKLVDVCVNNAGEILRSNFGREVMYEVATGGADGVLQSKLGEKLSGLYEAIASLAAEPKSEDAAAGDEHVLENFHSSRTIRKLILDCPAFALTLWTTALEGKSKLWAQGHSCKIVQAFLESTDSKVREISRVELQSLIDEGLLKIPDTKQSADKS 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 281014 286336 - Cp4.1LG17g00380.1 Cpe17g00043 483361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00043 654 MobiDBLite consensus disorder prediction 1 72 - -
Cpe17g00043 654 MobiDBLite consensus disorder prediction 444 481 - -
Cpe17g00043 654 SUPERFAMILY ARM repeat 107 425 IPR016024 -
Cpe17g00043 654 MobiDBLite consensus disorder prediction 1 30 - -
Cpe17g00043 654 ProSiteProfiles Pumilio RNA-binding repeat profile. 195 231 IPR001313 GO:0003723
Cpe17g00043 654 Pfam Pumilio-family RNA binding repeat 199 232 IPR001313 GO:0003723
Cpe17g00043 654 Pfam Pumilio-family RNA binding repeat 163 189 IPR001313 GO:0003723
Cpe17g00043 654 Pfam Pumilio-family RNA binding repeat 138 160 IPR001313 GO:0003723
Cpe17g00043 654 SMART pum_5 195 230 IPR001313 GO:0003723
Cpe17g00043 654 SMART pum_5 159 194 IPR001313 GO:0003723
Cpe17g00043 654 SMART pum_5 355 392 IPR001313 GO:0003723
Cpe17g00043 654 SMART pum_5 319 354 IPR001313 GO:0003723
Cpe17g00043 654 SMART pum_5 393 430 IPR001313 GO:0003723
Cpe17g00043 654 SMART pum_5 123 158 IPR001313 GO:0003723
Cpe17g00043 654 MobiDBLite consensus disorder prediction 53 72 - -
Cpe17g00043 654 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 101 456 IPR033133 GO:0003723
Cpe17g00043 654 Coils Coil 68 88 - -
Cpe17g00043 654 Coils Coil 650 654 - -
Cpe17g00043 654 ProSiteProfiles Pumilio RNA-binding repeat profile. 159 194 IPR001313 GO:0003723
Cpe17g00043 654 Gene3D - 95 453 IPR011989 -
Cpe17g00043 654 PANTHER UNCHARACTERIZED 1 648 IPR040059 GO:0003723
Cpe17g00043 654 MobiDBLite consensus disorder prediction 456 470 - -
Cpe17g00043 654 Pfam CPL (NUC119) domain 480 583 IPR012959 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00043 K14844 PUF6; pumilio homology domain family member 6 - csv:101210633 1003.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00043 Cpe-Chr17:281014 Cpe01g01082 Cpe-Chr1:6374843 9.97E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g138 . . . . . . . . Cmo08g01220 . . . . . . . . . . . . . . . Cla06g00454 Cam06g0484 Cec06g0488 Cco06g0487 Clacu06g0471 Cmu06g0472 Cre06g1245 . . . . . Csa06g01771 Chy11g01540 . . Blo07g00164 . . . Bpe13g00677 . Bma06g01487 . . . Cma08g01249 . Car08g01122 . . Cpe17g00043 Bhi12g02022 Tan06g2715 . . Hepe03g0075 . . . . . . . . . Lsi09g01460 . . Cme11g02048
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010706 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00043 Cpe_Chr17 FPKM 12.326565 10.986821 6.699021 6.343137 9.003226 8.507997 10.985768 2.648339 3.217758 2.798691