Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00047 ATGGATCTAAGCCACATGAAGGGATCGATACCGACGCCGACTTCAATTTCAGATAGAAAAGCCACTGAAATGGTTTCTGATCAGTTCCCGGCGGGTCTTCGCGTCCTGGTTGTGGATGATGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCTGTGACGAAATGTAATCGGGCTGAGATCGCATTATCCATGCTTCGTGAGAACAAAAACGGGTTTGATATTGTGTTAAGTGACGTGCATATGCCAGACATGGATGGATTCAAACTTCTTGAGCAAGTTGGGTTGGAGATGGATTTGCCCGTTATCAGTGAACTAATATTGGAGACATGTGATTGTACAGTGATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAGGGAGTCATTCATGGTGCTTGTGATTACCTGATCAAACCTGTTCGAATTGAAGCGCTCAGGAACATATGGCAACATGTAGTTCGGAAGCGAAAGACTGAATGGAAGGATTTAGAGCAATCTGGGAGCGTGGACGAGGGCGATCGAGAGAAAAATCCATCTGAAGGTGCTAACTATTCATCTTCAGTATATGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATACAGAAGAAGAGGCCGAGGAGAGGGACGATACGTCGACTTTAAAGAAGCCTAGGGTGGTATGGTCGGTTGAGCTCCATCAACAGTTTGTCGCTGCAGTTAAACAGCTAGGCATCGACAAGGCTGTTCCTAAAAAGATATTGGAGTTGATGAACGTTCCGGGGCTTACTCGAGAAAATGTTGCCAGTCACCTCCAGAAATATCGGTTATATCTTAGAAGGCTTAGTGGAGTATCATCGTCACACTCACTCCAATGTAATTTGAACAATTCTTTTATGAACCCTCAAGATCCACCTTTTGGGCCAATGGCTTCATTCAATGGAATTGATCTTCAGACACTTTCGGTCACTGGCCATCTCTCGCCTCAAAGCCTTGCTGCACTCCAAGCAACCGAATTTCGAAGGCCTGCTACAGCGAAATCTAGCATGTCGATGGCCCTTGTTGATCAGAACAACCTATTCAGCTTTGAAAATCCAAAATTGAGGTTTGTTGATGACCAAACGCCACACCTAAACAACAGTAAACCAATAAACTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCATTATGCACCCTTCTGTCCAGACTCAAGGGAACATAAACATGCCACTCAATATCAAGACAGAACATGGTGGAACTCAACTAATGCATCATTTGTCCCATCAGCAAACTGGAGGACAGGCTCTAAGTAACTCTCCTGCTAGCCACTTACCCAGAATTTCATCGTCGTTTCCGATCATATCAGGTAGCATTACGAGTCGAAATGGGACTGCTGATAGTACCCAAGGACCTGGATATAACCTAGTTTCGCCAGCATCCTTGATGATGAACTTTCCAATGAACCAACTCACAGAATTGTCGAACAATTTTTCTCTTCCGAGTGATTCGACGGTATCTACCTTAACCTGTAAAGGGGTGTTTCAAGAAGAGATTAGTTCAGATCTACACGGGTCGGATGGACTAATGTCGAGTTATGATGTTTTTAATGACTTGCATCTGCAGAAATCCCATGACTGGGATTCTCAGAATGTAGGCAGCTTTGCCTTTGGTACTTCTCACCATGGGAACTTCATACAGGATAGCTTTGATGTCTCACCTTCAACTTTGATTCATCATGGTTTTCCTCCAAGCCAAACAAATGGACAAAATCATAATTCATCCTCTTCTGGAAAGACTATCTTTCCCTTTTCGGATGCAACTCAACCCGAGAATGCGCAGAGTAATGCCGAGAAGTTGCCTCTCGATCCCGGGGACGTCAAACCTCAGAGAATCCCTGATGCAAGCTATCAAACCGACCTCTTACCTGAGAACTTTGGCCAGGATGAACTTCTCAGTGTCTTCCTCAAACAAGAACAACAAGGAGACAACGGATCGGTCGACTTTAGCGGTTACCAAACGGAAAATATTTGCGTTTAG 2052 44.54 MDLSHMKGSIPTPTSISDRKATEMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMDGFKLLEQVGLEMDLPVISELILETCDCTVMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVDEGDREKNPSEGANYSSSVYEGSWNSSKRRRDTEEEAEERDDTSTLKKPRVVWSVELHQQFVAAVKQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSSSHSLQCNLNNSFMNPQDPPFGPMASFNGIDLQTLSVTGHLSPQSLAALQATEFRRPATAKSSMSMALVDQNNLFSFENPKLRFVDDQTPHLNNSKPINLFHGIPTKMEPKQLAIMHPSVQTQGNINMPLNIKTEHGGTQLMHHLSHQQTGGQALSNSPASHLPRISSSFPIISGSITSRNGTADSTQGPGYNLVSPASLMMNFPMNQLTELSNNFSLPSDSTVSTLTCKGVFQEEISSDLHGSDGLMSSYDVFNDLHLQKSHDWDSQNVGSFAFGTSHHGNFIQDSFDVSPSTLIHHGFPPSQTNGQNHNSSSSGKTIFPFSDATQPENAQSNAEKLPLDPGDVKPQRIPDASYQTDLLPENFGQDELLSVFLKQEQQGDNGSVDFSGYQTENICV 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 301283 310577 + Cp4.1LG17g00470.1 Cpe17g00047 483365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00047 683 Pfam Myb-like DNA-binding domain 226 276 IPR001005 -
Cpe17g00047 683 MobiDBLite consensus disorder prediction 186 200 - -
Cpe17g00047 683 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 223 280 IPR017930 -
Cpe17g00047 683 MobiDBLite consensus disorder prediction 170 185 - -
Cpe17g00047 683 SUPERFAMILY Homeodomain-like 221 281 IPR009057 -
Cpe17g00047 683 Gene3D - 221 283 - -
Cpe17g00047 683 SUPERFAMILY CheY-like 32 167 IPR011006 -
Cpe17g00047 683 MobiDBLite consensus disorder prediction 201 221 - -
Cpe17g00047 683 CDD REC_typeB_ARR-like 35 160 - -
Cpe17g00047 683 MobiDBLite consensus disorder prediction 580 620 - -
Cpe17g00047 683 Gene3D - 33 177 - -
Cpe17g00047 683 Pfam Response regulator receiver domain 35 154 IPR001789 GO:0000160
Cpe17g00047 683 PIRSF RR_ARR_type-B 14 673 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cpe17g00047 683 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 656 IPR045279 GO:0009736
Cpe17g00047 683 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 224 277 IPR006447 GO:0003677
Cpe17g00047 683 MobiDBLite consensus disorder prediction 580 637 - -
Cpe17g00047 683 ProSiteProfiles Response regulatory domain profile. 34 160 IPR001789 GO:0000160
Cpe17g00047 683 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 656 - -
Cpe17g00047 683 MobiDBLite consensus disorder prediction 170 221 - -
Cpe17g00047 683 SMART REC_2 33 156 IPR001789 GO:0000160
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g00165 Cpe17g00047 CCT
Cpe03g01344 Cpe17g00047 CCT
Cpe03g01344 Cpe17g00047 ECH
Cpe08g00165 Cpe17g00047 ECH
Cpe12g00300 Cpe17g00047 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00336 Cpe-Chr2:1805259 Cpe17g00047 Cpe-Chr17:301283 1.23E-69 dispersed
Cpe07g00041 Cpe-Chr7:203304 Cpe17g00047 Cpe-Chr17:301283 6.96E-92 dispersed
Cpe17g00047 Cpe-Chr17:301283 Cpe18g00551 Cpe-Chr18:6077369 4.30E-86 dispersed
Cpe12g00300 Cpe-Chr12:1997163 Cpe17g00047 Cpe-Chr17:301283 0 wgd
Cpe17g00047 Cpe-Chr17:301283 Cpe17g00768 Cpe-Chr17:6046302 2.72E-12 wgd
Cpe17g00047 Cpe-Chr17:301283 Cpe03g01344 Cpe-Chr3:10903145 0 wgd
Cpe17g00047 Cpe-Chr17:301283 Cpe08g00165 Cpe-Chr8:1065824 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50764 PF00072 Response_reg 3.10E-17 CL0304 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00047 - K14491 csv:101210138 1097.03