Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe17g00047 | ATGGATCTAAGCCACATGAAGGGATCGATACCGACGCCGACTTCAATTTCAGATAGAAAAGCCACTGAAATGGTTTCTGATCAGTTCCCGGCGGGTCTTCGCGTCCTGGTTGTGGATGATGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCTGTGACGAAATGTAATCGGGCTGAGATCGCATTATCCATGCTTCGTGAGAACAAAAACGGGTTTGATATTGTGTTAAGTGACGTGCATATGCCAGACATGGATGGATTCAAACTTCTTGAGCAAGTTGGGTTGGAGATGGATTTGCCCGTTATCAGTGAACTAATATTGGAGACATGTGATTGTACAGTGATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAGGGAGTCATTCATGGTGCTTGTGATTACCTGATCAAACCTGTTCGAATTGAAGCGCTCAGGAACATATGGCAACATGTAGTTCGGAAGCGAAAGACTGAATGGAAGGATTTAGAGCAATCTGGGAGCGTGGACGAGGGCGATCGAGAGAAAAATCCATCTGAAGGTGCTAACTATTCATCTTCAGTATATGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATACAGAAGAAGAGGCCGAGGAGAGGGACGATACGTCGACTTTAAAGAAGCCTAGGGTGGTATGGTCGGTTGAGCTCCATCAACAGTTTGTCGCTGCAGTTAAACAGCTAGGCATCGACAAGGCTGTTCCTAAAAAGATATTGGAGTTGATGAACGTTCCGGGGCTTACTCGAGAAAATGTTGCCAGTCACCTCCAGAAATATCGGTTATATCTTAGAAGGCTTAGTGGAGTATCATCGTCACACTCACTCCAATGTAATTTGAACAATTCTTTTATGAACCCTCAAGATCCACCTTTTGGGCCAATGGCTTCATTCAATGGAATTGATCTTCAGACACTTTCGGTCACTGGCCATCTCTCGCCTCAAAGCCTTGCTGCACTCCAAGCAACCGAATTTCGAAGGCCTGCTACAGCGAAATCTAGCATGTCGATGGCCCTTGTTGATCAGAACAACCTATTCAGCTTTGAAAATCCAAAATTGAGGTTTGTTGATGACCAAACGCCACACCTAAACAACAGTAAACCAATAAACTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCATTATGCACCCTTCTGTCCAGACTCAAGGGAACATAAACATGCCACTCAATATCAAGACAGAACATGGTGGAACTCAACTAATGCATCATTTGTCCCATCAGCAAACTGGAGGACAGGCTCTAAGTAACTCTCCTGCTAGCCACTTACCCAGAATTTCATCGTCGTTTCCGATCATATCAGGTAGCATTACGAGTCGAAATGGGACTGCTGATAGTACCCAAGGACCTGGATATAACCTAGTTTCGCCAGCATCCTTGATGATGAACTTTCCAATGAACCAACTCACAGAATTGTCGAACAATTTTTCTCTTCCGAGTGATTCGACGGTATCTACCTTAACCTGTAAAGGGGTGTTTCAAGAAGAGATTAGTTCAGATCTACACGGGTCGGATGGACTAATGTCGAGTTATGATGTTTTTAATGACTTGCATCTGCAGAAATCCCATGACTGGGATTCTCAGAATGTAGGCAGCTTTGCCTTTGGTACTTCTCACCATGGGAACTTCATACAGGATAGCTTTGATGTCTCACCTTCAACTTTGATTCATCATGGTTTTCCTCCAAGCCAAACAAATGGACAAAATCATAATTCATCCTCTTCTGGAAAGACTATCTTTCCCTTTTCGGATGCAACTCAACCCGAGAATGCGCAGAGTAATGCCGAGAAGTTGCCTCTCGATCCCGGGGACGTCAAACCTCAGAGAATCCCTGATGCAAGCTATCAAACCGACCTCTTACCTGAGAACTTTGGCCAGGATGAACTTCTCAGTGTCTTCCTCAAACAAGAACAACAAGGAGACAACGGATCGGTCGACTTTAGCGGTTACCAAACGGAAAATATTTGCGTTTAG | 2052 | 44.54 | MDLSHMKGSIPTPTSISDRKATEMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMDGFKLLEQVGLEMDLPVISELILETCDCTVMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVDEGDREKNPSEGANYSSSVYEGSWNSSKRRRDTEEEAEERDDTSTLKKPRVVWSVELHQQFVAAVKQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSSSHSLQCNLNNSFMNPQDPPFGPMASFNGIDLQTLSVTGHLSPQSLAALQATEFRRPATAKSSMSMALVDQNNLFSFENPKLRFVDDQTPHLNNSKPINLFHGIPTKMEPKQLAIMHPSVQTQGNINMPLNIKTEHGGTQLMHHLSHQQTGGQALSNSPASHLPRISSSFPIISGSITSRNGTADSTQGPGYNLVSPASLMMNFPMNQLTELSNNFSLPSDSTVSTLTCKGVFQEEISSDLHGSDGLMSSYDVFNDLHLQKSHDWDSQNVGSFAFGTSHHGNFIQDSFDVSPSTLIHHGFPPSQTNGQNHNSSSSGKTIFPFSDATQPENAQSNAEKLPLDPGDVKPQRIPDASYQTDLLPENFGQDELLSVFLKQEQQGDNGSVDFSGYQTENICV | 683 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 301283 | 310577 | + | Cp4.1LG17g00470.1 | Cpe17g00047 | 483365 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe17g00047 | 683 | Pfam | Myb-like DNA-binding domain | 226 | 276 | IPR001005 | - | |
Cpe17g00047 | 683 | MobiDBLite | consensus disorder prediction | 186 | 200 | - | - | |
Cpe17g00047 | 683 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 223 | 280 | IPR017930 | - | |
Cpe17g00047 | 683 | MobiDBLite | consensus disorder prediction | 170 | 185 | - | - | |
Cpe17g00047 | 683 | SUPERFAMILY | Homeodomain-like | 221 | 281 | IPR009057 | - | |
Cpe17g00047 | 683 | Gene3D | - | 221 | 283 | - | - | |
Cpe17g00047 | 683 | SUPERFAMILY | CheY-like | 32 | 167 | IPR011006 | - | |
Cpe17g00047 | 683 | MobiDBLite | consensus disorder prediction | 201 | 221 | - | - | |
Cpe17g00047 | 683 | CDD | REC_typeB_ARR-like | 35 | 160 | - | - | |
Cpe17g00047 | 683 | MobiDBLite | consensus disorder prediction | 580 | 620 | - | - | |
Cpe17g00047 | 683 | Gene3D | - | 33 | 177 | - | - | |
Cpe17g00047 | 683 | Pfam | Response regulator receiver domain | 35 | 154 | IPR001789 | GO:0000160 | |
Cpe17g00047 | 683 | PIRSF | RR_ARR_type-B | 14 | 673 | IPR017053 | GO:0003677|GO:0003700|GO:0009736 | |
Cpe17g00047 | 683 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 15 | 656 | IPR045279 | GO:0009736 | |
Cpe17g00047 | 683 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 224 | 277 | IPR006447 | GO:0003677 | |
Cpe17g00047 | 683 | MobiDBLite | consensus disorder prediction | 580 | 637 | - | - | |
Cpe17g00047 | 683 | ProSiteProfiles | Response regulatory domain profile. | 34 | 160 | IPR001789 | GO:0000160 | |
Cpe17g00047 | 683 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 15 | 656 | - | - | |
Cpe17g00047 | 683 | MobiDBLite | consensus disorder prediction | 170 | 221 | - | - | |
Cpe17g00047 | 683 | SMART | REC_2 | 33 | 156 | IPR001789 | GO:0000160 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe08g00165 | Cpe17g00047 | CCT | |
Cpe03g01344 | Cpe17g00047 | CCT | |
Cpe03g01344 | Cpe17g00047 | ECH | |
Cpe08g00165 | Cpe17g00047 | ECH | |
Cpe12g00300 | Cpe17g00047 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g00336 | Cpe-Chr2:1805259 | Cpe17g00047 | Cpe-Chr17:301283 | 1.23E-69 | dispersed | |
Cpe07g00041 | Cpe-Chr7:203304 | Cpe17g00047 | Cpe-Chr17:301283 | 6.96E-92 | dispersed | |
Cpe17g00047 | Cpe-Chr17:301283 | Cpe18g00551 | Cpe-Chr18:6077369 | 4.30E-86 | dispersed | |
Cpe12g00300 | Cpe-Chr12:1997163 | Cpe17g00047 | Cpe-Chr17:301283 | 0 | wgd | |
Cpe17g00047 | Cpe-Chr17:301283 | Cpe17g00768 | Cpe-Chr17:6046302 | 2.72E-12 | wgd | |
Cpe17g00047 | Cpe-Chr17:301283 | Cpe03g01344 | Cpe-Chr3:10903145 | 0 | wgd | |
Cpe17g00047 | Cpe-Chr17:301283 | Cpe08g00165 | Cpe-Chr8:1065824 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50764 | PF00072 | Response_reg | 3.10E-17 | CL0304 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe17g00047 | - | K14491 | csv:101210138 | 1097.03 |