Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00057 ATGTCTCTCGCCATGAAAGCCGACGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTACAAGAATTGGATGTTACAAACATCAGGGAGGAAGCAAGTGGAAGATGGCTTCGCCCAAATGAAATTCATGCAATTCTATGTAACTACAAATATTTTGTCATCCACGTCAAGCCAGTGAACTTGCCTACAAGTGGAACCATTGTACTATTTAACCGCAAGATGCTTAGGAATTTCCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGACGGGAAGACCATAAAAGAAGCACACGAACACCTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTAGATAACACAACCTTTGTTCGTCGGTGTTATTGGCTCCTTGATAAGACTCTTGAACACATTGTCCTTGTTCATTACCGTGAAACACAAGAGGTCAATTTCAGCCCAATGCATCTGCAGTTGCAGAGCTCTCCATCCATGTCTATGAATTCAAATTCTGGTTCTGTCTCTGATCCATCAACTCCTTGCCTTTTATCGGAAGAACTTGATTCTAGGGATAATCATGGTTATTCCGTTGACGAAAATGAACGTTCAGAGCCCAGAGACACTACAACAGCCATGAATCATGAACAACGGCTTCATGAGATCAACACGCTTGAGTGGGATGAACTTCTTGTGACAGATGAGCCTTTCAAACCTTCCATGCCTAAAGGAGACAGATTTTCATACTTTGACCAACGGAGCCAAGTCCCAACAAATGTGGCCAACAATTTATTGGGGAACACGCCTTTGTTTAATAATCCAGTTGAGTCAATTGGGAGTGCCTATATGCCACTAACGAGTGGTCAAACAAATTTAAATGTGCAGAGTAAGGAATCCATTCCAATTACTTCATTGGACAATTTGTTAGATGATGGATTGCTGCAAAGCCAGGACAGCTTTGGACGATGGATAAATGAAGTCATCACTGAGTCTCCTGATACAGTCATTGATCCTGCCATTATTGAGCCATCCATTTCATCCATTCACAATTCTTTTACTGATCCAACATTAAATCACTGTCAATCTTCTGTTATGGAGCAAATTTTTAACATAACCGATATCTCACCTGCGTGGGCCTTTTCAACAGAAAAAACCAAGATTCTAATCACGGGATATTTTCACAATGAGTACTTACATCTGGCAAACTCCAATATATTGGTCGTGTGTGGTAATGCCAGTGTTAATGCTGGTTTAATTCAACCTGGAGTTTACCGATGTGTGGTACAACCACATTCAACTGGACTTGTAAATTTATTCGTGAGCTTAGATGGTCATAAACCTATCAGTCAAGTTCTGAATTTTGAGTATCGTGCACCACTTTTACGAGAGCCTGTAGTTGCTTCAGAACAGATCCAAAAGTGGGAGGAGTTTCAAGTTCAGATGCGGCTTGCTCATCTGTTGTTTTCTACATCCAGAAGCCTGAGCATCATGTCGACTAAATTGTCATCCACTTCCCTAAACGAGGCCAGGAAATTTGCTGTCAAAACTTCTGACATTTCTGACAGTTGGATTTATTTGTTAAACTCAATAAAAGAAAACAACACTCCATTTCCTCAAGCAAGAGACGGTGTTCTTGAGATCATTTTGAAAAGTAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGATTTCGATATAAAAGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACCTGGGCTATACATCTATTTTCCTGGTCTGGTTTATCAATAAATTTTCGAGATAAATTCGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGTACTTCTCACTATTTGACCACAAAAATCTTCTTGTATAGGGAGAAAATGGTAGCTGTTCTTTTGTCAGTTGGGGCAAAACCAAACTTGGTCACCGATCCCTCATCAAAGAACCCTCTGGGATACATAGCTGCAGATCTTGCATCTATGAATGGTTATGATGGCTTAGCTGCTTATCTTTCTGAAAAGGCTTTGGTGTCACATTTTAATGATATGAGCTTGGCTGGAAATGTTCGTGGTTCATTGGAAACTAGTACAATAACCAACGTCACTAACTCGGATAGCATCAGTGAGGAGCAGATGTATATGAAAGAGACATTGGCAGCTTACCGAACAGCTGCTGATGCAGCAGCGCGCATACAAACTGCATTCCGTGAGAATTCTTTAAAGCAAAGGACTCAAGCAATTGAATTCTCCACCCCTGAAGATGAAGCACGTGGTATTGTTGCAGCCATGAAGATTCAACATGCTTACCGCAACTTTGAGTCACGAAAAAGAATGGCAGCTGCAGCTCGTATTCAATACAGATTCCGCACTTGGAAGATCCGCAAAGAGTTCCTTAATATGCGTCGTCATGCTATTAGGATTCAAGCTGCATTTAGAGGCTTCCAAATGCGGAGGCAGTATCGCAAGATTTTATGGTCGGTAGGCGTAATCGATAAAGCCATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTTCGTGGGCTTCAAGTTGCACCTGCTGAAGTGACAGAAAAGCAGGAAATTGGCGTAGAAGAGGACTTCTACCACGTGTCCCAAAAACAAGCAGAAGAGCGAGTAGAGAAAGCTGTTGTACGGGTTCAGGCTCTGTTTCGATCAAAGAAAGCTCAAGAGGAGTATCGAAGGATGAAGTTAACCTACGATGAAGCAGCGCTGGAATATGAAGAACTTTCACATCCTGATATGAATTTGAGTAGCTGA 2802 41.58 MSLAMKADVQGSLVGSEIHGFHTLQELDVTNIREEASGRWLRPNEIHAILCNYKYFVIHVKPVNLPTSGTIVLFNRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNVERIHVYYAHGLDNTTFVRRCYWLLDKTLEHIVLVHYRETQEVNFSPMHLQLQSSPSMSMNSNSGSVSDPSTPCLLSEELDSRDNHGYSVDENERSEPRDTTTAMNHEQRLHEINTLEWDELLVTDEPFKPSMPKGDRFSYFDQRSQVPTNVANNLLGNTPLFNNPVESIGSAYMPLTSGQTNLNVQSKESIPITSLDNLLDDGLLQSQDSFGRWINEVITESPDTVIDPAIIEPSISSIHNSFTDPTLNHCQSSVMEQIFNITDISPAWAFSTEKTKILITGYFHNEYLHLANSNILVVCGNASVNAGLIQPGVYRCVVQPHSTGLVNLFVSLDGHKPISQVLNFEYRAPLLREPVVASEQIQKWEEFQVQMRLAHLLFSTSRSLSIMSTKLSSTSLNEARKFAVKTSDISDSWIYLLNSIKENNTPFPQARDGVLEIILKSRLREWLIERVAEGSKKSTDFDIKGQGVIHLCAILGYTWAIHLFSWSGLSINFRDKFGWTALHWAAYYGSTSHYLTTKIFLYREKMVAVLLSVGAKPNLVTDPSSKNPLGYIAADLASMNGYDGLAAYLSEKALVSHFNDMSLAGNVRGSLETSTITNVTNSDSISEEQMYMKETLAAYRTAADAAARIQTAFRENSLKQRTQAIEFSTPEDEARGIVAAMKIQHAYRNFESRKRMAAAARIQYRFRTWKIRKEFLNMRRHAIRIQAAFRGFQMRRQYRKILWSVGVIDKAILRWRLKRKGFRGLQVAPAEVTEKQEIGVEEDFYHVSQKQAEERVEKAVVRVQALFRSKKAQEEYRRMKLTYDEAALEYEELSHPDMNLSS 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 356934 368049 + Cp4.1LG17g00260.1 Cpe17g00057 483375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00057 933 MobiDBLite consensus disorder prediction 162 184 - -
Cpe17g00057 933 SUPERFAMILY E set domains 371 458 IPR014756 -
Cpe17g00057 933 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 20 927 - -
Cpe17g00057 933 MobiDBLite consensus disorder prediction 162 214 - -
Cpe17g00057 933 Pfam CG-1 domain 36 148 IPR005559 GO:0003677
Cpe17g00057 933 ProSiteProfiles IQ motif profile. 786 812 IPR000048 GO:0005515
Cpe17g00057 933 SMART iq_5 808 830 IPR000048 GO:0005515
Cpe17g00057 933 SMART iq_5 785 807 IPR000048 GO:0005515
Cpe17g00057 933 SMART iq_5 886 908 IPR000048 GO:0005515
Cpe17g00057 933 Gene3D - 547 691 IPR036770 -
Cpe17g00057 933 ProSiteProfiles IQ motif profile. 888 916 IPR000048 GO:0005515
Cpe17g00057 933 SUPERFAMILY Ankyrin repeat 572 684 IPR036770 -
Cpe17g00057 933 Coils Coil 900 920 - -
Cpe17g00057 933 Pfam IQ calmodulin-binding motif 810 830 IPR000048 GO:0005515
Cpe17g00057 933 Pfam IPT/TIG domain 372 457 IPR002909 -
Cpe17g00057 933 Gene3D Immunoglobulins 365 461 IPR013783 -
Cpe17g00057 933 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Cpe17g00057 933 MobiDBLite consensus disorder prediction 188 214 - -
Cpe17g00057 933 ProSiteProfiles IQ motif profile. 809 833 IPR000048 GO:0005515
Cpe17g00057 933 Gene3D - 787 833 - -
Cpe17g00057 933 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 927 - -
Cpe17g00057 933 SMART CG_1_2 32 150 IPR005559 GO:0003677
Cpe17g00057 933 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 781 912 IPR027417 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00311 Cpe17g00057 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00612 Cpe-Chr14:3876868 Cpe17g00057 Cpe-Chr17:356934 2.17E-31 dispersed
Cpe17g00057 Cpe-Chr17:356934 Cpe17g01072 Cpe-Chr17:8150984 2.53E-10 dispersed
Cpe12g00311 Cpe-Chr12:2056191 Cpe17g00057 Cpe-Chr17:356934 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50766 PF03859 CG-1 2.20E-44 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00057 K21596 - csv:101211298 1409.43