Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00063 ATGACAAAGCAAGGAACAAAAATGGCGGACCCGAAAACCAGAGCACAACTCGCCGGAGGAATGACCGCCACTGACTCATGGATCAGAAAGCACCGTCTCATCTACACCGACGCCACACGCCATCCTCTCGTCCTCTCCATTCGCGACGGCACCGTCGATCTCAACGCCTTCAGAACTTGGGTGGAACAGGAATGCGAATTTCTGAGATCCTTCACGGCGTTCGTCGCAAGTGTGTTGGTTAAAGCATGGAAAGAATCGGACGATAGAGCGGACGAGGAAGTGATCCTTGGTAGTTTGGCTTCTCTCAACGACGAATTCGCGTGGTTCAAAAAAGAAGCCCTAAAACGAGATATCGACTTGACTAAAATTGTTCCTCAGAACGCAACCGCCGGCTATTCCAGGTTTCTGGAGAGTTTGATGCGGCCGGAAATGGAGTACACGGTGGCGATTACGGCTCTTTGGGCTATCGAAGCTGTGTACCACGAGAGCTTTGCGTACTGCATGGAAGATGGATCAAAAACGCCATTGGAATTGAGAGAAGCCTGCGAAAGATGGGGGAACGAAGGATTTGGAAACTACTGCAATACCTTGAAGAAGATTGTGGATAGACGATTGGAGATGGCTGCTGGCGAAATAAGTAAAAAAACAGAAGTGGCTTTGTTGCGGGTTCTTGAATGTGAGGTTGCGTTTTGGAATATGAGCCGGGATGGTCCACGACAAACTATTTGA 729 49.25 MTKQGTKMADPKTRAQLAGGMTATDSWIRKHRLIYTDATRHPLVLSIRDGTVDLNAFRTWVEQECEFLRSFTAFVASVLVKAWKESDDRADEEVILGSLASLNDEFAWFKKEALKRDIDLTKIVPQNATAGYSRFLESLMRPEMEYTVAITALWAIEAVYHESFAYCMEDGSKTPLELREACERWGNEGFGNYCNTLKKIVDRRLEMAAGEISKKTEVALLRVLECEVAFWNMSRDGPRQTI 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 388078 390993 - Cp4.1LG17g00210.1 Cpe17g00063 483381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00063 242 SUPERFAMILY Heme oxygenase-like 38 234 IPR016084 -
Cpe17g00063 242 Gene3D - 20 237 IPR016084 -
Cpe17g00063 242 PANTHER BIFUNCTIONAL TH2 PROTEIN 16 236 - -
Cpe17g00063 242 PANTHER BIFUNCTIONAL TENA-E PROTEIN 16 236 - -
Cpe17g00063 242 CDD TenA_E_At3g16990-like 24 233 - -
Cpe17g00063 242 PIRSF Pet18p 11 237 IPR026285 -
Cpe17g00063 242 Pfam TENA/THI-4/PQQC family 29 236 IPR004305 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00063 K20896 TENA_E; formylaminopyrimidine deformylase / aminopyrimidine aminohydrolase [EC:3.5.1.- 3.5.99.-] - csv:101209552 388.652
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g82 . . . . . . . . Cmo08g01241 . . . . . . . . . . . . . . . Cla06g00432 Cam06g0458 Cec06g0464 Cco06g0463 Clacu06g0445 Cmu06g0446 Cre06g1222 . . . . . Csa06g01742 Chy11g01564 . . Blo07g00151 Bda11g00505 . . Bpe13g00692 . Bma06g01472 Sed04g2388 . . Cma08g01273 . Car08g01143 . . Cpe17g00063 Bhi12g01924 Tan06g2749 Cmetu11g2014 Lac11g0930 . . Lcy12g0801 . . . . . . . Lsi09g01486 . . Cme11g02076
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010279 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 3 3 0 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00063 Cpe_Chr17 FPKM 7.509434 10.940934 8.853605 8.993898 0.0 0.0 0.0 0.0 0.0 0.0