Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00068 ATGGGAACTCCACCAGCAGAGGAGCTTCTGAGGAAGATCCAAGAGCTGGAGGAGGGTCAAGCCCATCTCAAGAAGGAAATGTCCAAATTTCTTCTCTCTGGAACTTCCGCTGACTCGAACTCTGACCACCAAATCCAGTATCATCATCATCACCATCAGCGTTCTCAATCGATATCGCCTCAGCGCTCTAGATTTGCTGCGGCTCAGAGGAGAGGTGGCGCTGCTGGAGGTTCAGACAGCGCCGCGGCGGCGTGGAAGAAAGGCTCTTCCTCGTTTCGGCATTCTTCTCCACTTCAGAGGGAGAGTAGGACTTGTGAACCCTCGAATGCCGCCGCCGGAGTCGGAACCAGCGGCGGCTCTGGCCCCGCCGCCGTTAATTTCACCAACAAACAGTATCTCAATATCTTGCAGTCAATGGGACAGTCTGTTCATATTTTAGACCTAAATTATCGCATAATTTACTGGAACCGAGCTGCTGAAATCGTGTATGGATATTCTGCGGCGGAGGCTCTCGGCCAGGATGGCATTGCGCTTCTAGTAGACTCTGAGGACTTTGCCTTTGCAAATGATGTAATTCTTCGTGTTATGGCGGGTAAGCATTGGACTGGTCACTTCCCTGTGAAGAACAAGATGGGGCAGAAGTTTATAGTTGTTGCCACCGACACTCCCTTCTACGATGATGGTGTATTGGTCGGGATCATCTGTATATCGAGCGACTCACGGCCATTTCAAGAGTTGAAGATTCCTTTAGCAGCAGGTTCTAAACAGCAGGATGCAGATTCAAGCATTGTCCGATCAAGAAGCACGGTTTCAACTAAACTTGGTCTTGATCCTCAGCAGCCTCTGCAAGTAGCAATTGCTTCAAAGTTATCAAACTTGGCATCAAAGGTAAGCAACAAAGTCAAGTCCAAAATTCGAACTGGAGAAAACAGCTTGGATCGTGAAGGTGGAAGCGGAGATGGTTATCACTCTGATCATGGCTTTCCAGATGCAACTCTTCGTGACCATCGGGAGGACGCAAATTCAAGTGGAGCTAGCACACCTCGTGGAGATTCCACGACGCATGGTGAGTTTTCCCAGGTTGAAGAGCAATTATCTGGCAAACAGGTCAGGAATCATGATGATGAGGTTAAAGGAAAGCCTACCATTCAGAAGATGTTATCCTCAAAAGCAGAAGAGTGGATTGCTAAGAAGGGCTTATCGTGGCCGTGGAAAGGGACCGAGCAGGAAGGAGGATCTGAAGCAAGGGCAGGCCGTTTTGCCTGGCCTTGGTTACAAAATGATCAAGAAGTTGAACCAGCAAATCATAAGAGTTGCTCTTNAAAGGGACCGAGCAGGAAGGAGGATCTGAAGCAAGGGCAGGCCATTTTGCCTGGCCTTGGTTACAAAATGATCAAGAAGCTGAACCAGCAAATCATAAGAGTTGCTCTCCATCTGGGAGACCAGAAATGCAGCAAAACGACGGTCATCGAGCAGCCAATAACGAGGCCTCGGGATCCTGGTCATCGTTCAATGTTAACAGCACAAGCAGTGCCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTGTCAACAAGGTCGACTCGGAAACAGACTGCTTGGATTTTGAAATCTTGTTCTTGTGGAACTGTCTATCATGCGCTGTGGTATGGATCAGACGTTGCCGTTAAAGTGTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAGACAGGAGGTATCCCTGATGAAAAAACTCCGACACCCGAACATTCTTCTCTTTATGGGAGTTGTGACTTCGCCTCAGCGTCTTTGCATAGTCACGGAATTCCTCCCACGGTTCGTTCTCCACTACCAATCTTGGTTTAACATTTTTTATTTATGTTTCCGAAGCATTCTCCATAGGCTGATTGAAATGTCTGTGAAGAATACAGAGGTCAGCACAGTAAATGGCGTACAGCAGCAACCGCGTCGCCTTCGTGCTCTCGCAAGGTTGTCTCGACAATCTTCTTGTCCAACTGTAAACATTACAACAACAGATCCGGGGATGGATTAG 2040 48.04 MGTPPAEELLRKIQELEEGQAHLKKEMSKFLLSGTSADSNSDHQIQYHHHHHQRSQSISPQRSRFAAAQRRGGAAGGSDSAAAAWKKGSSSFRHSSPLQRESRTCEPSNAAAGVGTSGGSGPAAVNFTNKQYLNILQSMGQSVHILDLNYRIIYWNRAAEIVYGYSAAEALGQDGIALLVDSEDFAFANDVILRVMAGKHWTGHFPVKNKMGQKFIVVATDTPFYDDGVLVGIICISSDSRPFQELKIPLAAGSKQQDADSSIVRSRSTVSTKLGLDPQQPLQVAIASKLSNLASKVSNKVKSKIRTGENSLDREGGSGDGYHSDHGFPDATLRDHREDANSSGASTPRGDSTTHGEFSQVEEQLSGKQVRNHDDEVKGKPTIQKMLSSKAEEWIAKKGLSWPWKGTEQEGGSEARAGRFAWPWLQNDQEVEPANHKSCSXKGPSRKEDLKQGQAILPGLGYKMIKKLNQQIIRVALHLGDQKCSKTTVIEQPITRPRDPGHRSMLTAQAVPVAVEVPVVVLSTRSTRKQTAWILKSCSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRFVLHYQSWFNIFYLCFRSILHRLIEMSVKNTEVSTVNGVQQQPRRLRALARLSRQSSCPTVNITTTDPGMD 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 406723 410830 + Cp4.1LG17g00310.1 Cpe17g00068 483386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00068 679 SUPERFAMILY PYP-like sensor domain (PAS domain) 132 239 IPR035965 -
Cpe17g00068 679 MobiDBLite consensus disorder prediction 367 381 - -
Cpe17g00068 679 MobiDBLite consensus disorder prediction 305 385 - -
Cpe17g00068 679 SUPERFAMILY Protein kinase-like (PK-like) 530 612 IPR011009 -
Cpe17g00068 679 TIGRFAM sensory_box: PAS domain S-box protein 130 239 IPR000014 -
Cpe17g00068 679 CDD PAS 139 239 IPR000014 -
Cpe17g00068 679 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 37 432 - -
Cpe17g00068 679 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 538 626 - -
Cpe17g00068 679 MobiDBLite consensus disorder prediction 20 120 - -
Cpe17g00068 679 MobiDBLite consensus disorder prediction 305 342 - -
Cpe17g00068 679 Coils Coil 6 26 - -
Cpe17g00068 679 MobiDBLite consensus disorder prediction 89 120 - -
Cpe17g00068 679 Gene3D Phosphorylase Kinase; domain 1 530 606 - -
Cpe17g00068 679 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 37 432 - -
Cpe17g00068 679 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 538 626 - -
Cpe17g00068 679 ProSiteProfiles Protein kinase domain profile. 529 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00068 679 Pfam Protein tyrosine and serine/threonine kinase 535 607 IPR001245 GO:0004672|GO:0006468
Cpe17g00068 679 Pfam PAS fold 131 236 IPR013767 GO:0006355
Cpe17g00068 679 Gene3D PAS domain 140 242 - -
Cpe17g00068 679 MobiDBLite consensus disorder prediction 343 366 - -
Cpe17g00068 679 ProSiteProfiles PAS repeat profile. 128 199 IPR000014 -
Cpe17g00068 679 SMART pas_2 130 197 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00068 - - - cpep:111778099 791.571
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00324 Cpe17g00068 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00068 Cpe-Chr17:406723 Cpe18g00079 Cpe-Chr18:2046181 5.64E-19 dispersed
Cpe12g00324 Cpe-Chr12:2140956 Cpe17g00068 Cpe-Chr17:406723 1.18E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g62 Blo01g00031 . Bda03g01183 Bda08g00332 Bpe04g01116 . . Bma05g00994 Cmo08g01244 Cmo17g00359 . . . . . . . . . . . . . . Cla06g00427 . . . . . . Cone14ag0716 Cone15ag0728 . . . Csa06g01870 Chy11g01573 . . . . . . . . . . . . Cma08g01276 Cma17g00369 Car08g01146 Car17g00344 Cpe12g00324 Cpe17g00068 Bhi12g01932 . . . . . Lcy12g0852 . . . . . . . Lsi09g01493 . . Cme11g02082
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003283 3 5 4 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 0 1 1 1 0 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62925 PF13426 PAS_9 2.00E-08 CL0183 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00068 Cpe_Chr17 FPKM 32.461212 38.628109 34.637794 35.795544 27.957493 29.796661 29.130074 31.240854 28.538185 29.100353