Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00072 ATGCTCCGGGGATTGATGAATCTGCTCTCTCTTTGTTGGAAGCCATTCGGGCGTGGTGGTGAAAATTTGAGCTCTGTTGGAGTCATTGGAACCAATTGTGGTGGCAAAGATTCTAAGGATAGCTTACTCTGGTTCTATGATTATGGCAAGTATGCTTCCGGTGATTTTTCCATGGCCGTCGTTCAGGCCAACCAGGTGCTTGAGGACCAGAGCCAGATTGAATCTGGTCCTTTTGGTACCTTCGTCGGAATCTACGATGGCCACGGCGGCCCCGACGCCGCTCGATATGTCTGCAACAACTTGTTTAGGCGTTTTCGGGATGAAGAACAAGGAGTTGTGACTCGTGAAACCATCCTGCAGGCATTTCGTCGAACAGAGGAAGGGTTTACAACCGTCGTGTCAGAGTTGTGGAGTACTCGACCCGAGATAGCAACAGTTGGGACGTGCTGTCTAGTAGGGGTGATACATGAGCAGACACTCTACGTGGCGAGTCTTGGAGATTCTCGTGCTGTGTTAGGGAGGAAAGTTGGCAACACTGGAGAGATTGCTGCCATTCAGTTATCAACGGAGCATAATGCAAATCTTGAGGATATAAGGCATGAATTAAGAGATATGCATCCAAACGATCCTCAAATTGTGTTTCAAAGGCGCGGAGTTTGGAGAGTGAAAGGCATTATACAGGTTTCTAGGTCCATTGGGGATGTCTATATGAAACATTCTCGGTATAATACTGACAGAATCAATGCTAAATTTAGACTTCCTGAACCGATGAATATGCCTATAATGACTGCAGTACCCACGATTCTTGCTCACCCTCTTCATCAAAACGATTCTTTTCTTATTTTTGCATCCGATGGACTTTGGGAACACCTAACCAATGAAAAGGCTGTGGATATTGTCCACAATCATCCTCGTGCAGGAAGTGCAAAAAGGCTTGTGAAGGCAGCCCTTCAAGAAGCAGCTAGAAAACGAGAGATGCGGTATTCAGATCTTCGAAAGATCGACAAGAAGGTTCGGCGTCATTTTCACGATGACATTAGTGTTGTTGTTTTATTTTTCAACCACGACCTTATATCCCGAAACCATACCCTCCTAGATCAGCCATTATCAGTCCGAAGTGCCTTCGATCATTGA 1134 45.86 MLRGLMNLLSLCWKPFGRGGENLSSVGVIGTNCGGKDSKDSLLWFYDYGKYASGDFSMAVVQANQVLEDQSQIESGPFGTFVGIYDGHGGPDAARYVCNNLFRRFRDEEQGVVTRETILQAFRRTEEGFTTVVSELWSTRPEIATVGTCCLVGVIHEQTLYVASLGDSRAVLGRKVGNTGEIAAIQLSTEHNANLEDIRHELRDMHPNDPQIVFQRRGVWRVKGIIQVSRSIGDVYMKHSRYNTDRINAKFRLPEPMNMPIMTAVPTILAHPLHQNDSFLIFASDGLWEHLTNEKAVDIVHNHPRAGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDISVVVLFFNHDLISRNHTLLDQPLSVRSAFDH 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 417449 420802 + Cp4.1LG17g00240.1 Cpe17g00072 483390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00072 377 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Cpe17g00072 377 ProSiteProfiles PPM-type phosphatase domain profile. 55 353 IPR001932 -
Cpe17g00072 377 Gene3D - 47 363 IPR036457 -
Cpe17g00072 377 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 3 377 - -
Cpe17g00072 377 Pfam Protein phosphatase 2C 80 323 IPR001932 -
Cpe17g00072 377 CDD PP2Cc 56 353 IPR001932 -
Cpe17g00072 377 SUPERFAMILY PP2C-like 64 354 IPR036457 -
Cpe17g00072 377 SMART PP2C_4 49 351 IPR001932 -
Cpe17g00072 377 PANTHER ALPHABET, ISOFORM E-RELATED 3 377 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00327 Cpe17g00072 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00325 Cpe-Chr16:5096653 Cpe17g00072 Cpe-Chr17:417449 2.45E-143 dispersed
Cpe17g00072 Cpe-Chr17:417449 Cpe19g00880 Cpe-Chr19:6451702 4.04E-149 dispersed
Cpe12g00327 Cpe-Chr12:2155518 Cpe17g00072 Cpe-Chr17:417449 7.35E-157 wgd
Cpe17g00072 Cpe-Chr17:417449 Cpe03g01365 Cpe-Chr3:11023353 6.38E-36 wgd
Cpe17g00072 Cpe-Chr17:417449 Cpe08g00188 Cpe-Chr8:1268820 6.42E-32 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00072 K01102 - csv:101207284 693.345