Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00076 ATGGGAGGAACTGCCGGGGGATTCCGTCCAATTCCCGGTACTGGCGGTGGTTTTGGGTCCAATTTCCAGCCGCCACCTGTTGCAGGGCAGAAACGGGGGTATCCTTTCTCCGGCCGTGGAAGTTCTCCAGATCATCAGGACGGAAGCAGTTTTGCCAAGCTGTTTGTTGGATCTGTTCCAAGGACAATTACAGAAGAAGATATTCGCCCATTGTTTGAAGAACATGGAAATGTAATTGAAGTAGCTTTGATAAAGGATAAGAGAACAGGTCAGCAACAAGATTGTAATGAAATGTTGAATGTGGATGTAGCATTAATTTTCCATGTGACAGTTGTAGCTTTTTCAGTGGCTAAATGGTGTTGTTTTGTAAAATATACAACCTCAGAAGAAGCTGATAGAGCAATTAGGAATTTGCACAATCAACATACCCTTCCTGGGGGATCAGGCCCGATTCAAGTTAGATATGCGGATGGAGAGCGAGAGCGCCTTGGTGCAGTTGAGTACAAATTGTTTGTTGGTTCCCTAAATAAACAAGCCTCAGAAAAAGAAGTCAAGGAAATCTTTTCTCAATATGGAGTAGTTGAAGATGTTTACCTTATGCGGGATGAAATGAGGCAAAGTCGTGGATGTGGATTCGTGAAGTACTCTCATAGGGATATGGCACTGGCAGCTATAAATGCACTTAATGGAATCTATACAATGAGAGGTTGTGATCAGCCATTAAGTGTTCGCTTTGCTGACCCGAAGAAGCCTAGATCTGGAGATTCAAGGGGCACTCCTGCATTCGGAGGTCCAGGTTTTGGTTCTCGTCTTCAAGCACCTGGGCCAAGGCATGGCCGTTGTTTTTTAGTACCAATGCCTAATTTTGGTGAATTTATGGGTGATCGAATTCCAATTGATGTACGAGGTTTTAGGCCACCTGTTGATGCTGGTGTTCATACCTTTGGGGGTCAATTGCCTCCTAGGTCCAGTGAAATGGGATTGCCTTTGAATTTGAGTGGTCCTGCTAGTAGGTTTAGAGGTCCCACCCAAGGGATAGTCAATCCTGGATCCTCAACTTCTCCACTGAATTTTATTCAGTCATCAGCAAGTCAACATCCACCACTGGGCCTGCAAACGTCACCAGTGCTAAAGGCTGTTCAGTCACCGAAACAATTGCCACCTCCGAGTCAATTGCACTCTCATGCTCCGACCTCCTATTCTCAGACACATACATCTCCAGCATCAGTACAGCGGCATAGTCAACCGCCGAATTTTAATTCTTCTAGTCAAATGCCCTTTAGTCGGCCTGCACCTTCACAAGAGTCACCTGGCTTAGGTTCACAGTTGGCCGTATCTCAAGCTATGATCCAGCAGAGTGCCTCATCTGCTGCAGCCACACAGACTCCTCTGACTATGAACTTACAATCCCATGCTACTGCTCCTAACCAACAGCAGCTTCAGCCACGTCAGAGCTCACCTTCTCGGTTGGCTCACATGCTGTCACAGCAAAAACAAACCCTGGAGGCTAGTTTTCAGTCTTCCCAGCAGGCATTCTCTCAGATACAGCAGCAGTTGCAGCTGATACAACCATCAAGTCAAAGTTCAACATTGCAGCCAAGTTCCCAGACTATTAAGCAGCAGTCTCACTGGGCGGGGGTTGTGCCACATACAGCTTCCAGTGCCACTTCTGCAACTTCAGATACACGTTCATCTATGGGCCCTCTTGTAGCTATAAATACCCAACTTGTAGCTCCTCTAAAATGCAATTGGACAGAGCACACTTCTCCTGATGGTTACAAATACTATTACAACAGTGTAACCGGTGAGAGTAAGTGGGAGAAGCCTGAAGAGCTTTCGGTGATTGAGCATCAACCAAAGCCACCAGTACTGCAGCCCCATAACCAGCCACATCCTCAACTACTATCTGCCCAGCAACTCTTTCAAACTCCGCAAGCCCAGCTTCAAGCTCAGTTCCAGACACGGATGCCCCACCCTCAGCCGCTACAGCAACCTTCATTCCATTCACAGGAAGGTGCTTATACACAATTGCAGACAGTTAATAGCTCAGTAAATGATCCTACTCGCTTCCACCAGGGACCTCAGGCGAATCAAGAGTGGGCATGGAAAAATAAATAA 2118 46.69 MGGTAGGFRPIPGTGGGFGSNFQPPPVAGQKRGYPFSGRGSSPDHQDGSSFAKLFVGSVPRTITEEDIRPLFEEHGNVIEVALIKDKRTGQQQDCNEMLNVDVALIFHVTVVAFSVAKWCCFVKYTTSEEADRAIRNLHNQHTLPGGSGPIQVRYADGERERLGAVEYKLFVGSLNKQASEKEVKEIFSQYGVVEDVYLMRDEMRQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLSVRFADPKKPRSGDSRGTPAFGGPGFGSRLQAPGPRHGRCFLVPMPNFGEFMGDRIPIDVRGFRPPVDAGVHTFGGQLPPRSSEMGLPLNLSGPASRFRGPTQGIVNPGSSTSPLNFIQSSASQHPPLGLQTSPVLKAVQSPKQLPPPSQLHSHAPTSYSQTHTSPASVQRHSQPPNFNSSSQMPFSRPAPSQESPGLGSQLAVSQAMIQQSASSAAATQTPLTMNLQSHATAPNQQQLQPRQSSPSRLAHMLSQQKQTLEASFQSSQQAFSQIQQQLQLIQPSSQSSTLQPSSQTIKQQSHWAGVVPHTASSATSATSDTRSSMGPLVAINTQLVAPLKCNWTEHTSPDGYKYYYNSVTGESKWEKPEELSVIEHQPKPPVLQPHNQPHPQLLSAQQLFQTPQAQLQAQFQTRMPHPQPLQQPSFHSQEGAYTQLQTVNSSVNDPTRFHQGPQANQEWAWKNK 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 432623 446206 + Cp4.1LG17g00280.1 Cpe17g00076 483394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00076 705 MobiDBLite consensus disorder prediction 472 494 - -
Cpe17g00076 705 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 248 IPR000504 GO:0003723
Cpe17g00076 705 MobiDBLite consensus disorder prediction 682 705 - -
Cpe17g00076 705 MobiDBLite consensus disorder prediction 1 47 - -
Cpe17g00076 705 Gene3D - 580 621 - -
Cpe17g00076 705 SMART ww_5 579 611 IPR001202 GO:0005515
Cpe17g00076 705 MobiDBLite consensus disorder prediction 654 673 - -
Cpe17g00076 705 MobiDBLite consensus disorder prediction 344 447 - -
Cpe17g00076 705 Gene3D - 164 255 IPR012677 -
Cpe17g00076 705 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 236 IPR000504 GO:0003723
Cpe17g00076 705 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 92 IPR000504 GO:0003723
Cpe17g00076 705 SUPERFAMILY RNA-binding domain, RBD 168 272 IPR035979 GO:0003676
Cpe17g00076 705 MobiDBLite consensus disorder prediction 526 564 - -
Cpe17g00076 705 Pfam WW domain 581 609 IPR001202 GO:0005515
Cpe17g00076 705 Gene3D - 39 163 IPR012677 -
Cpe17g00076 705 SUPERFAMILY WW domain 583 614 IPR036020 GO:0005515
Cpe17g00076 705 SMART rrm1_1 169 244 IPR000504 GO:0003723
Cpe17g00076 705 SMART rrm1_1 53 154 IPR000504 GO:0003723
Cpe17g00076 705 ProSiteProfiles WW/rsp5/WWP domain profile. 578 611 IPR001202 GO:0005515
Cpe17g00076 705 CDD WW 581 611 IPR001202 GO:0005515
Cpe17g00076 705 PANTHER TRANSFORMER-2-RELATED 23 677 - -
Cpe17g00076 705 SUPERFAMILY RNA-binding domain, RBD 33 162 IPR035979 GO:0003676
Cpe17g00076 705 MobiDBLite consensus disorder prediction 312 447 - -
Cpe17g00076 705 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 158 IPR000504 GO:0003723
Cpe17g00076 705 MobiDBLite consensus disorder prediction 247 270 - -
Cpe17g00076 705 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 23 677 - -
Cpe17g00076 705 CDD RRM2_FCA 169 248 IPR034645 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00076 - - - cmax:111494860 1165.6
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00332 Cpe17g00076 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01533 Cpe-Chr2:13036035 Cpe17g00076 Cpe-Chr17:432623 4.03E-14 dispersed
Cpe06g00216 Cpe-Chr6:1147651 Cpe17g00076 Cpe-Chr17:432623 3.55E-07 dispersed
Cpe12g00989 Cpe-Chr12:8312254 Cpe17g00076 Cpe-Chr17:432623 2.60E-47 dispersed
Cpe17g00076 Cpe-Chr17:432623 Cpe08g00113 Cpe-Chr8:728182 3.37E-17 dispersed
Cpe12g00332 Cpe-Chr12:2196254 Cpe17g00076 Cpe-Chr17:432623 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00076 Cpe_Chr17 FPKM 0.37541 0.0 0.502638 0.380824 0.0 0.0 0.0 3.414781 3.528781 3.11462