Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00079 ATGATCTTATTAGGTCCTGTGACGCACGGCCAGGTTTCGTTTCTAATCGGATTTATAACCACATTCGTAGCCTGGATTTATTCGGAGTACTTAGTATTTAAAAATAATTCGATCTCTTCCAAAGTAAGAGACTCTGATGTTGGCTTGGCTGAGGCGGAAAGTCTTAGTGTAAAGGAAGATGATAGAGCTGTTTTATTAGATGGTGGAGCTATCAAGCCTAGTCCTTATGGAGCTCGAATTCCACCTTCTTTCTCTAATCTTCTCAGGTTCATATTGCTGGAACAGTCTTTCTTGATAGAAAATCGAATGCTACTCAGAGCAGCATGTGAATTTGGTTTTCTTTTAGCATATTTCTACATTTGTGACCGTACCGATATATTTGAATCCTCAAAGAAGAGTTACAATCGAGATCTTTTCTTCTTCCTTTTATTCCTTCTCATCATGGTGTCAGCTATAACTTCATTCAAGATACATCTCGATAAATCGCCATTTTCAGTGAAACCCATACTGTTCTTGAATAGGCATCAAACTGAGGAGTGGAAAGGATGGATGCAGGTGATTTTTTTGATGTACCATTACTTCGCTGCAAGAGAAATTTACAATGTTGGTCGTGTATGTGTTGCTGCATATGTGTGGATGACTGGATTTGGGAATTTTTCATATTACTATATTCGCAAAGACTTTAGCTTTTCCAGATTTGCTCAGATGATGTGGCGGCTTAATTTCTTGGTGTTTGGTTGCTGCATTGTCCTTGACAACAGTTACATGCTATACTATATCTGCCCCTTGCACACTTTTTTCTCTCTTACGGTATACGGCTTTGTTGGTATTCTGAACAAGTACAATGAGATTAGATCCGTCATTGCTGTGAAATTCTTGGCTTGCTTCTTGATCGTTATCATAGTATGGGAAATACCCGGAGTGTTTGATGTGCTTTGGGAACCATTTACCTTCATTTTAGGATATAAGGATCCAAATCGATTGGCAGAACAGCTGCCTCCTATGTATGAGTGGCACTTCCGCACAGGGCTTGATCGCTATATTTGGATATTAGGCATGCTGTATGCTTTCTATTATCCAACTGCTGAGAAATGGATTGAAAAGTTAGACGAAGCCAAACTGAAGCGCAGGATATTGATCAAAACGACAATTGTTGTGACATCCTCAATGAGTTATTTGACCTTTCAGGCTGCATATCTGTGGTATGAGTACATATTCAAATTGGACAGTATTACTTACAACAAATACCATCCTTACACTTCCTGGATTCCCATTACGGCCTATATATGTATACGAAATGTTACCCAGAGTACCCGTAGCTATACTTTGCTCGTTTTCGGTTGGATTGGAAAGATTTCACTGGACACATACATCTCGCAGTTCCATATTTGGTTAAGATCAAATGCTCCGGATGCCCAGCCGAAATTGTTGCTGACTATCATCCCTGACTATCCTTTATTAAACTTCATGCTTACAACTATCATACTGATGGCGGTCAGTATTAGTTATTTACTTTCACGTCTTGATGATATTGAAAATGCTGAGGTGTTTGCTTGGATGCAGGCTTCTTACAGGCTGTCTGAGCTGACAAATACATTTAAAACGGCATTTGTACCTAGCAAGGACAATAAGCGCATTATGTATAACATGATCAGTGGAGGTGCAATCATGGGCATCCTCTACTCCTTGTCCTTTGTATTCCTCAAAGTGCCACCAGCGTTGGTAAAAAGTTTGAGAATTGGAGAAAATCAAATAAAGATTGTACAGAAGGGCACTGGAGTTGACTACAATTTTCTGTGA 1800 39.44 MILLGPVTHGQVSFLIGFITTFVAWIYSEYLVFKNNSISSKVRDSDVGLAEAESLSVKEDDRAVLLDGGAIKPSPYGARIPPSFSNLLRFILLEQSFLIENRMLLRAACEFGFLLAYFYICDRTDIFESSKKSYNRDLFFFLLFLLIMVSAITSFKIHLDKSPFSVKPILFLNRHQTEEWKGWMQVIFLMYHYFAAREIYNVGRVCVAAYVWMTGFGNFSYYYIRKDFSFSRFAQMMWRLNFLVFGCCIVLDNSYMLYYICPLHTFFSLTVYGFVGILNKYNEIRSVIAVKFLACFLIVIIVWEIPGVFDVLWEPFTFILGYKDPNRLAEQLPPMYEWHFRTGLDRYIWILGMLYAFYYPTAEKWIEKLDEAKLKRRILIKTTIVVTSSMSYLTFQAAYLWYEYIFKLDSITYNKYHPYTSWIPITAYICIRNVTQSTRSYTLLVFGWIGKISLDTYISQFHIWLRSNAPDAQPKLLLTIIPDYPLLNFMLTTIILMAVSISYLLSRLDDIENAEVFAWMQASYRLSELTNTFKTAFVPSKDNKRIMYNMISGGAIMGILYSLSFVFLKVPPALVKSLRIGENQIKIVQKGTGVDYNFL 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 451799 456193 + Cp4.1LG17g00110.1 Cpe17g00079 483397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00079 599 Pfam 10 TM Acyl Transferase domain found in Cas1p 102 500 IPR012419 -
Cpe17g00079 599 PANTHER PROTEIN REDUCED WALL ACETYLATION 2 8 501 - -
Cpe17g00079 599 PANTHER N-ACETYLNEURAMINATE 9-O-ACETYLTRANSFERASE 8 501 - -
Cpe17g00079 599 PANTHER N-ACETYLNEURAMINATE 9-O-ACETYLTRANSFERASE 520 572 - -
Cpe17g00079 599 PANTHER PROTEIN REDUCED WALL ACETYLATION 2 520 572 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00079 K03377 CASD1; N-acetylneuraminate 9-O-acetyltransferase [EC:2.3.1.45] - csv:101212512 865.529
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00101 Cpe-Chr10:678298 Cpe17g00079 Cpe-Chr17:451799 0 dispersed
Cpe17g00079 Cpe-Chr17:451799 Cpe20g00516 Cpe-Chr20:2995149 0 dispersed
Cpe17g00079 Cpe-Chr17:451799 Cpe09g00761 Cpe-Chr9:7096119 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g38 . . Bda03g01192 . Bpe04g01124 . Bma04g01116 . Cmo08g01256 Cmo17g00370 . . . . . . . . . . . . . . . . . . . . . . Cone5ag1607 Cone6ag0907 Cone9ag0913 . Csa06g01858 . . . . . . . . . . Sed09g0580 . . Cma08g01291 Cma17g00381 Car08g01157 Car17g00352 . Cpe17g00079 Bhi12g01944 Tan06g2781 Cmetu04g2722 Lac11g0982 Hepe03g0034 . Lcy12g0867 . . . . . . . . . . Cme11g02093
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000500 4 6 3 2 3 3 4 3 4 2 2 4 5 4 4 5 4 4 5 4 4 3 3 3 3 4 3 7 5 2 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00079 Cpe_Chr17 FPKM 5.19489 5.455345 5.643244 6.80672 5.741523 5.968343 6.059118 11.724981 11.251633 11.150296